Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11595 219 6e-52 seq9146 214 3e-50 seq11110 134 2e-26 seq8766 127 3e-24 seq11555 89.7 7e-13 >seq11595 Length=173172 Score = 219 bits (242), Expect = 6e-52 Identities = 573/863 (66%), Gaps = 12/863 (1%) Strand=Plus/Plus Query 46359 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||||| || || |||||||| || | | ||||||| |||||| ||||||||||||| Sbjct 64597 TTTCTCAAAGAAGTTAGTTTTACCCTGAAGTGATATAAGTTCCATCCAATCAAACGGATT 64656 Query 46419 AGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTC 46478 ||| ||| || | || | || | | | ||||||||| ||||| || || Sbjct 64657 AGTCACACCGTACACCTTACCGTACCCAAGCGCACCTAACAGTCTATCAGCAACAAACTC 64716 Query 46479 TATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGT 46538 |||||| |||| | |||| |||||||| | | | || || || || Sbjct 64717 GATATACTGACTCATTAACTCACGGTTCATTCCAACTAACGCGCATGGAAGCGCGTCGCA 64776 Query 46539 AAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACT 46598 | ||||||| |||||| || || || | | || ||| |||| ||||| | Sbjct 64777 TACAAACTCTCTTTCAATCTCTACTGCGTCGCAGACGATTGATTTTACACGCTCCTCCGT 64836 Query 46599 TGG-TGGATGCATCAAAT-GTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCA 46656 | | | | | | | | | |||| | | || || ||||| || || | |||||| Sbjct 64837 TAGCTTTGTTCTTAAGAGCGAGTAAAGA--AGGCAAGCGAAATCGCAGTGTAAGCCTTCG 64894 Query 46657 TCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGC 46716 |||| | ||||| ||||| || || || | |||||||| ||||| || || || ||| Sbjct 64895 TCTCGAGAGATTAACTCGTTTGAGAAAGTTAATCCAGGCATGAGTCCTCGTTTCTTTAGC 64954 Query 46717 CAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGAC 46775 || || |||| || |||| | || || ||||| || ||||| ||| ||||| || || Sbjct 64955 CAGAAGATAGA-GCAAAAGCTACCGGAGAAGAAGATACCTTCAACACAAGCGAAAGCTAC 65013 Query 46776 AAGTCTCTCTCCGTAACT--GGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTT 46833 | || || || | | | ||| || |||||| | ||||| | ||| || Sbjct 65014 GATTCGTTCAGCGAAGGTTTGAGATCC--ATCGATCCACGTCATCGCCCACTGAGCTTTC 65071 Query 46834 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCT 46893 ||| || ||||| || ||||| |||||| ||||||| | | | || | ||||| Sbjct 65072 TTCGCAACGCAAGGAATAGTTTCAATAGCACGAAAGAGATGATCTCTCTCTTTGTTATCT 65131 Query 46894 TTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATC 46953 || | ||| ||||| | | ||||||||||| || |||||||| || ||||| || || Sbjct 65132 TTGATATAAGTATCGAGAAGGAGACTATACATCTCAGAATGAATATTCTCAATCGCGATT 65191 Query 46954 TGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACA-AAATCGTTCAGA 47012 || |||||||||||| | || || | | ||||| |||| ||| ||||| || Sbjct 65192 TGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGTACATCTG-ACATGAATCGAGAAGC 65250 Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 | |||||| || |||||||| |||||| || || || | || ||||| ||||| Sbjct 65251 GAGATTCTCTAAAACGATTCCATCTGAAGCAGCGAAGAAAGCGAGGACGTGTTTGATAAA 65310 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 | ||| || | || || | ||| || |||| ||||| ||||||||| Sbjct 65311 GTGACGTTCGCCGTCGTTTAGATTCTCCCAATCGCGTCCGTCTTGTGATAGATCTACTTC 65370 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 |||||| |||||||| || || || ||||| |||||||| | ||| || | | || || Sbjct 65371 TTCAGCAGTCCAGAACGATGCTTCGGCTTTCTTATACATCTCCCAGATCTGTGGGTAGTG 65430 Query 47193 GATCGGAAAAATAACAAATCTAT 47215 || || || ||| ||||||| Sbjct 65431 AATTGGGAACATACAGAATCTAT 65453 >seq9146 Length=70564 Score = 214 bits (236), Expect = 3e-50 Identities = 588/887 (66%), Gaps = 22/887 (2%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||||||||| || || |||||||| |||||||| |||||||| |||| | ||||||| Sbjct 53945 TTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTTTACCTTGTAGTGATATAAG 54004 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAA-- 46455 |||||| ||||||||||||| || ||| || | || | |||| | || Sbjct 54005 TTCCATCCAATCAAACGGATTTGTCACACCGTACACCTTACCGTACCCTAG--CGAAACC 54062 Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATG 46515 || | |||||| ||||| || || |||||| |||| | |||| |||||||| | Sbjct 54063 ATTAATCTATCCGCAACAAACTCAATATACTGACTCATTAGCTCACGGTTCATTCCAACC 54122 Query 46516 AGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT 46575 | | || || || || | ||||||| ||| || || || || | | Sbjct 54123 AACGCGCATGGAAGCGCGTCGCATACAAACTCTCTTTCGATTTCAACCGCGTCGCAGACG 54182 Query 46576 ATCGATGTTAC----TGTTTCCTCA-CTTGGTGGATGCATCAAATGTTTAAACATTAAAC 46630 || || | || | || | | | ||| || || || | | || | | | | Sbjct 54183 ATTGACTTCACGCGCTCTTCCGTAAGCTTCGTTCT--CAACAGA-GAGTAGAGA--AGGC 54237 Query 46631 ATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCC 46690 | || |||||||| || | |||||| |||| | |||| ||| || || || || | | Sbjct 54238 AAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAAC 54297 Query 46691 CAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAAT 46749 ||||||| || || || || || ||||| || || | | |||| | || || ||||| Sbjct 54298 CAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAAG 54356 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACT--GGCATCATTATGAA 46807 || ||||| ||| ||||| || || | || || | || | | ||| || | Sbjct 54357 ATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATCC--ATCGA 54414 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 |||| | ||||| | || || ||| | || ||||| || ||||| || || || Sbjct 54415 TCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCGAA 54474 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 ||||| | | | || | | ||||||| | ||||||||| | | ||||||||||| | Sbjct 54475 AGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACATCT 54534 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | |||||||| || ||||| || || ||||||||||||||| | || || | | | Sbjct 54535 CAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGACTT 54594 Query 46988 GTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 | || |||| ||| ||||| || | |||||| || |||||||| ||||| Sbjct 54595 GAACATCTG-ACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGCG 54653 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 ||||| || | || ||||| || || | |||| || | || || | ||| ||| Sbjct 54654 AAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCACCGTCGTTTAGATTCTCCCAATCA 54713 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 || | ||||| |||||||||||| || ||||||||||| || || ||||| || Sbjct 54714 CGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTTCTTG 54773 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 ||||| | ||| || | |||| || |||||||| ||| ||||| Sbjct 54774 TACATCTCCCAGATCTGTGGATAATGAATCGGAAACATACAGAATCT 54820 >seq11110 Length=291012 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||||| ||||| | ||| | || | ||||||||||| ||| || Sbjct 226147 CCTCCTTGGTCAACATATCGAGCAGTATCATTGAATACACGCAACATTGGAACAATACCA 226206 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| ||||||||| ||||||| |||||| || ||| Sbjct 226207 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGATGCACGGATATTATGAACAGAA 226266 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| || || ||| Sbjct 226267 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTATCGTAAATG 226326 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || |||||||| ||||| | |||||||||||| Sbjct 226327 CCCTCAATGCTATCATCTTTCATGCAGATTAGAAAACAGCTA 226368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 || |||||||||||||| || || || || ||||||||||||||||| || | | | || Sbjct 224897 AGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTGTGACGCATGTTT 224956 Query 76145 GAAATTTCAGCT-TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| ||| ||| | ||| || ||||| | ||||||||| ||||||||||| Sbjct 224957 GAAGTTTTTGCTGTCT-CCACAGGATAGTAATTCACATCTATAATCTTATTGAGATT 225012 Score = 89.7 bits (98), Expect = 7e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| || ||||| | |||||||||||||||||||||||| | | ||| | | || Sbjct 226477 AGTTCCAGCGTTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 226536 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 || |||| || | | ||| ||||| | ||| ||||| || ||||| || | ||| | Sbjct 226537 ATAAGTTTTGATTGCAGATTCAATATCATCCTTG-TGAATGCCAACAGCAACCCTCATAA 226595 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||| | ||| ||| | | | |||||| | |||||| | || | Sbjct 226596 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGAGTTTCAAGAGGTATGACCTCTCAA 226655 Query 77172 AAGTTTTAAAACCAAA 77187 ||||||||| ||||| Sbjct 226656 GAGTTTTAAATCCAAA 226671 >seq8766 Length=69736 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| ||||| || | |||||||||||||||||||||||| | | ||| | | || Sbjct 54575 AGTTCCAGCATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 54634 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| || | | ||||||||| | ||| ||||| || ||||| || | ||||| Sbjct 54635 GTAAGTTTTGATTGCAGATTCTATATCATCCTTG-TGAATACCAACAGCAACCCTCATCA 54693 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||||| ||| ||| | | |||||||| | ||||||| |||| | Sbjct 54694 GCATGTGTTGAGGTCTTTCAACAACTGTCCCTTGGATTTTCAAAAGGTATGATCTTTCAA 54753 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||| |||||| | | ||| ||| || | || || ||||| Sbjct 54754 GAGTTTTAAACCCAAAAAAATCATATTCAAAATCACGGTCATAGATAAT 54802 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||||| ||| || | | ||||||||||| |||||| ||| ||| ||| Sbjct 53791 CTCTCTTTCATATTTTGTGTACAGTCTCTCAAATTCATCACCCCAACAATCTGCCAGACC 53850 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 |||| |||||| || || | || |||||||| ||||| || || | | ||| || Sbjct 53851 AGGAGCTTCATTAGGGCAAAACAGTGACCACTGCCCATCACTCTGGACTCTCTCCATGAA 53910 Query 76612 GAGATCAGGTATCCATAGAGCA 76633 ||||| || | ||| |||||| Sbjct 53911 AAGATCTGGAACCCAGAGAGCA 53932 >seq11555 Length=225698 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | ||| || | ||||||| |||||||||||||||| | | ||| | || || Sbjct 13602 GTTCCGGAATTGAAGAGAGTAGGAGTTGCATGAGTGAACCATCTCTGAGACATTAAATGA 13661 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| || | | || ||||| | ||| || || |||| || | ||| ||| Sbjct 13662 TAAGTTTTGATTGCAGAATCAATATCTTCCTTATGGATACCAACAGAAACCCTCATTAAC 13721 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || ||||||| ||| ||| || | | ||| || | ||||||| |||| | Sbjct 13722 ATGTGTTGAGGTCTTTCAACAACTTTGCCTTGGACTTTTAATAGGTATGATCTTTCAAGT 13781 Query 77174 GTTTTAAAACCAAAATA 77190 |||||||||||||| || Sbjct 13782 GTTTTAAAACCAAAGTA 13798 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 75736 CAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAA 75795 ||| ||||| ||| | ||||| || |||||||||||| | | ||||||| || || | Sbjct 11470 CAAGACTCTACGACTATAAATGTTGGAGGTATATGGTTCAAAACATTCATTATTCCCAAG 11529 Query 75796 AATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATG 75855 ||| ||| ||||||||||| ||||| |||||||| | | | ||||||| |||| Sbjct 11530 AATCTGACTGGTTGAAGCAGTTGGCATTGGTGCCACTAGAAGAGAGTTTCTGATTCCATT 11589 Query 75856 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCA 75915 || | |||| ||||| ||| ||||| | ||||| || | |||| ||| Sbjct 11590 CTTTGAAACCATATCCCTTAGAGCAACCCAGTCCCATCGGTCTGAAGGGATTACATTCCA 11649 Query 75916 GAGATCGTATTGTAGAATTCC 75936 | ||| ||| ||||| || Sbjct 11650 CATATCTGGTTGAAGAATACC 11670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712829999668800