Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq10724 161 1e-34 seq9882 138 1e-27 seq8473 136 5e-27 seq8685 113 6e-20 seq8998 109 7e-19 >seq10724 Length=33194 Score = 161 bits (178), Expect = 1e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 170980 TTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGA 171039 ||||||||| |||||| ||| |||||||||| ||||||||||| ||| ||||||| Sbjct 30718 TTGAATGTGAAGAAGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGAATTGATTTAC 30777 Query 171040 ACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTG 171099 || || |||||||||||| |||| || | |||||||| ||| ||| | |||||||| Sbjct 30778 CTTACTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTG 30837 Query 171100 TTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGA 171159 |||||||||| || ||| ||| ||||||||||||||||||| ||| || |||| | Sbjct 30838 TTGATCAATCAGACCAAAGTTTTCTTGATGATGATCAGATTGGTGAAGGATTTGTTCTCA 30897 Query 171160 CCTGCGTCTCATATCCTACAAGTGATTGTGTAATCTTGACTGAACAGGAAGA 171211 | || | | |||||||| |||| ||| || ||| | || ||||| Sbjct 30898 CTTGTGCAGCTTATCCTACTTCTGATGTTGTTATTAAAACTCACCAAGAAGA 30949 >seq9882 Length=79551 Score = 138 bits (152), Expect = 1e-27 Identities = 193/267 (72%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 183648 TTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCA 183707 |||| | |||||||| | | | ||| ||| | || | || |||| |||| ||||| Sbjct 46252 TTTTTTTTATGGTATGTCTATAAGAATCTTTGGTATTTTCAGCTTTATGATTGTATTCCA 46193 Query 183708 AGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGG 183767 || ||||||||| | || || ||||| || |||||| | ||||| |||||||| ||| | Sbjct 46192 GGCTGAGCACAACTTTCTTATACACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCAG 46133 Query 183768 TGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAA 183826 || || || || |||| | |||| ||| | | || ||||| | | | | || | |||| Sbjct 46132 CGGCTCCCTATTTAGTGTA-TGCATAGTTTTTTTGTAACTTC-TAGTTTGATCAGGGAAA 46075 Query 183827 CCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACA 183886 |||| || ||| || || | ||||||| |||||||||||| || | || |||| Sbjct 46074 CCACAGAAAATGAATCTGCTAATGAAGGTTACATATTCGGTCAAGAAAAATAAACATACA 46015 Query 183887 ACATTGTCGCTGCTCATGGATACTTTG 183913 || |||| ||||||||||| || |||| Sbjct 46014 ACTTTGTAGCTGCTCATGGTTATTTTG 45988 >seq8473 Length=72639 Score = 136 bits (150), Expect = 5e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 170980 TTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGA 171039 ||||||||| || || ||| | |||||||| ||||||||||| ||| |||||||| Sbjct 6457 TTGAATGTGAAGATGACGTTTATGTCCTTGATGCAGCTGAAGAAGCTGGAATTGATTTGC 6398 Query 171040 ACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTG 171099 || || || ||||||||| |||| || | |||||||| ||| ||| | |||||||| Sbjct 6397 CTTACTCATGCCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTG 6338 Query 171100 TTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGAT 171139 |||||||||| || ||| ||||||||||||||| || || Sbjct 6337 TTGATCAATCTGACCAAAGTTTCCTTGATGATGAACAAAT 6298 >seq8685 Length=252540 Score = 113 bits (124), Expect = 6e-20 Identities = 171/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 170954 AGCACCTGACGGCACCGAAAATACTTTTGAATGTGCTGAAGATCAATATATTCTTGATGC 171013 || |||||| || | ||||| ||||| | | || ||||| ||||| | ||||| Sbjct 168722 AGGACCTGATGGTAAAGAAAACGAATTTGAGGTTCCAGATGATCAGTATATATTGGATGC 168781 Query 171014 TGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTG 171073 ||||||||||||||| |||| || ||||| ||| | |||||||| ||||| || || Sbjct 168782 AGCTGAAGAAGCAGGAGTTGAGTTACCTTATTCTTGTAGAGCTGGTGCGTGTTCTACATG 168841 Query 171074 TGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCCTTGATGATGA 171133 |||||| || |||| ||| |||||||| || ||| || || |||||||||| Sbjct 168842 TGCTGGTAAGATTGTATCGGGTGAAGTTGATCAGTCGGATGGTTCGTTTCTTGATGATGG 168901 Query 171134 TCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACA-AGTGATTGTGTAA 171192 ||| |||| |||| || |||| || || | ||||| ||| ||||||||| | Sbjct 168902 TCACTTTGAGAATGGTTATGTTTTGACTTGTGTGGCTTATCC-ACAGTCTGATTGTGTTA 168960 Query 171193 T 171193 | Sbjct 168961 T 168961 >seq8998 Length=67453 Score = 109 bits (120), Expect = 7e-19 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 170979 TTTGAATGTG-CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTT 171037 |||||| ||| | || || ||||| || | ||||| ||||||||||||||| |||| || Sbjct 36702 TTTGAA-GTGACAGATGACCAATACATATTGGATGCAGCTGAAGAAGCAGGAGTTGACTT 36760 Query 171038 GAACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTC 171097 || || || | |||||||||||||| || |||||||| || |||| || ||| Sbjct 36761 ACCTTACTCTTGCAGAGCTGGTGCTTGTTCAACTTGTGCTGGTAAGATTGTGACAGGTGA 36820 Query 171098 TGTTGATCAATCCGATCAATCTTTCCTTGATGATGATCA 171136 |||||| ||||| ||| || || ||||||||| |||| Sbjct 36821 TGTTGACCAATCTGATGGTTCGTTTCTTGATGATAATCA 36859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621979305565800