Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq9882 125 8e-24 >seq9882 Length=79551 Score = 125 bits (138), Expect = 8e-24 Identities = 173/241 (72%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 |||| ||| | |||| || ||| | || |||||||||||||||||| | || || ||| Sbjct 46227 ATCTTTGGTATTTTCAGCTTTATGATTGTATTCCAGGCTGAGCACAACTTTCTTATACAC 46168 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || || || ||| | || ||||| ||||| || |||| || || || |||| ||||| Sbjct 46167 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCAGCGGCTCCCTATTTAGTG-TATGCAT 46109 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||| | || |||||| || | | || ||||| |||||||| || || | Sbjct 46108 AGTTTTTTTGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 46049 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTT 164644 ||||||| || ||||| ||| || |||| |||||| | || || ||||| ||||| ||| Sbjct 46048 GGTTACATATTCGGTCAAGAAAAATAAACATACAACTTTGTAGCTGCTCATGGTTATTTT 45989 Query 164645 G 164645 | Sbjct 45988 G 45988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557572738483800