Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq9882 131 2e-25 seq10724 109 7e-19 seq8473 100 3e-16 seq8685 93.3 5e-14 >seq9882 Length=79551 Score = 131 bits (144), Expect = 2e-25 Identities = 168/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 178087 TTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATG 178146 |||| || ||| |||| ||||| || ||||||||| | || || ||||| || |||||| Sbjct 46215 TTCAGCTTTATGATTGTATTCCAGGCTGAGCACAACTTTCTTATACACCCATTTCACATG 46156 Query 178147 TTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTT 178206 || || || |||||||| || | || || || || |||| ||||| ||| | | || Sbjct 46155 TTAGGTGTAGCTGGTGTATTCAGCGGCTCCCTATTTAGTGT-ATGCATAGTTTTTTTGTA 46097 Query 178207 ACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTT 178265 ||||| | | | | || | |||||||| || || ||| | || | ||||||| || Sbjct 46096 ACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACATATT 46038 Query 178266 CGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTT 178313 |||||||||| || | || |||||| | || |||||||||||||| || Sbjct 46037 CGGTCAAGAAAAATAAACATACAACTTTGTAGCTGCTCATGGTTATTT 45990 >seq10724 Length=33194 Score = 109 bits (120), Expect = 7e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 |||| |||| || ||| ||| |||| ||||| ||||| ||||| ||| |||| | Sbjct 30718 TTGAATGTGAAGAAGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGAATTGATTTAC 30777 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| || || |||||| | || || |||||||| || ||| | | || || | | Sbjct 30778 CTTACTCATGTCGTGCTGGTTCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTG 30837 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | |||||| || ||| || ||||||||||| ||||| | || ||| || |||| | Sbjct 30838 TTGATCAATCAGACCAAAGTTTTCTTGATGATGATCAGATTGGTGAAGGATTTGTTCTCA 30897 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 |||||| | |||||||| ||| ||| ||| | ||| | ||||||| || || Sbjct 30898 CTTGTGCAGCTTATCCTACTTCTGATGTTGTTATTAAAACTCACCAAGAAGATGATCT 30955 >seq8473 Length=72639 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231 ||| | || ||||| ||||| ||||| ||| |||| | ||||| ||||| |||||| Sbjct 6437 TATGTCCTTGATGCAGCTGAAGAAGCTGGAATTGATTTGCCTTACTCATGCCGTGCTGGT 6378 Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291 | || || |||||||| || ||| | | || || | || |||||| || ||| Sbjct 6377 TCTTGCTCAAGTTGTGCTGGTAAAGTTGTGTCTGGTTCTGTTGATCAATCTGACCAAAGT 6318 Query 176292 TTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACG 176351 |||||||||||||| || || | || ||| | |||| ||||||| | | |||||||| Sbjct 6317 TTCCTTGATGATGAACAAATGGGTGAAGGATATGTTCTCACTTGTGCTGCTTATCCTACT 6258 Query 176352 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 ||| ||| ||| | || | ||||||| || Sbjct 6257 TCTGATGTTGTTATTCAAACCCACCAAGAAGAAGA 6223 >seq8685 Length=252540 Score = 93.3 bits (102), Expect = 5e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 176151 TTTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTC 176210 |||||| | | || ||||||||||| ||||||| ||||| |||||||||||||| | Sbjct 168747 TTTGAGGTTCCAGATGATCAGTATATATTGGATGCAGCTGAAGAAGCAGGAGTTGAGTTA 168806 Query 176211 AACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACG 176270 || || || | |||||||| ||||| | ||||| || || | | ||||| Sbjct 168807 CCTTATTCTTGTAGAGCTGGTGCGTGTTCTACATGTGCTGGTAAGATTGTATCGGGTGAA 168866 Query 176271 GTAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTG 176330 || ||||| ||| ||||| |||||||||| || | || |||| || || Sbjct 168867 GTTGATCAGTCGGATGGTTCGTTTCTTGATGATGGTCACTTTGAGAATGGTTATGTTTTG 168926 Query 176331 ACTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 |||||||| | ||||| | |||||||| ||| | ||| | || ||| ||||| Sbjct 168927 ACTTGTGTGGCTTATCCACAGTCTGATTGTGTTATTCAAACTCACAAGGAAACTGAACT 168985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596219878264400