Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq9146 174 2e-38 seq11595 167 2e-36 seq10889 86.0 7e-12 >seq9146 Length=70564 Score = 174 bits (192), Expect = 2e-38 Identities = 356/523 (68%), Gaps = 7/523 (1%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || || |||||||| |||| |||||| || | | || | |||||| || || ||||| Sbjct 54237 CAAGCGAAATCACAGTGTAAGCCTTCGTCTCGAGAGATTAGTTCATTTGAGAAAGTTAAA 54296 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAA 23627 || ||||| | |||||||| || | ||| || |||| | |||| | | ||||| ||||| Sbjct 54297 CCAGGCATGAGACCTCGTTTCTTTAGCCAGAAGATTGAA-CAAAAGCTACCGGAGAAGAA 54355 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||||| |||||| || || || || | ||| | |||| ||| | | | || Sbjct 54356 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTT---TGAGATCCATC 54412 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 ||||| | | | ||| | || ||| | || || || ||||||||||| Sbjct 54413 GATCCAAGTCATCGCCCATTGTGCTTTCTTCGTAACGCAAGGGATAGTTTCAATTGCGCG 54472 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 |||||| | | | |||| ||||||| | ||||||||||| | || | ||||||||| Sbjct 54473 AAAGAGATGATCTCTCTCTTTATTATCTTTGATATATGTATCGAGAAGGAGACTATACAT 54532 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 |||||||||||||| ||||| || || ||||| || |||||| | || || || | Sbjct 54533 CTCAGAATGAATATTCTCAATCGCGATTTGAAATCCGTAAAAAGCACGCGCCTCCGAGAC 54592 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 ||||||||| | |||| ||| | ||| || ||| || ||||| ||||| Sbjct 54593 TTGAACATCTGACATGAATCGAGAAGCAAGATTCTCTAAAACGATTCCATCTGATGCAGC 54652 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTG-ATAATTTTTTCCAAT 23986 || ||||| ||||| | ||| || || || | |||| | || | || || | ||||| Sbjct 54653 GAAAAAAGCGAGAACGTGTTTGATGAAGTGACGTTCA-CCGTCGTTTAGATTCTCCCAAT 54711 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 || || | ||||| ||| ||||| || | ||||| || Sbjct 54712 CACGTCCGTCATGTGATAGATCTACTTCTTCGGCGGTCCAGAA 54754 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 23198 CACTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCT 23257 ||||| ||||||| |||||| || |||||||||||| |||||||||| || || | Sbjct 53926 CACTAGACATAACAGAAGCTTTTTGGTAATCCCCAACACGTTTTTCGAAAAAGTTAGTTT 53985 Query 23258 TACCCTCTAATGATATATTTTCCATAAAATCAAATGGATT 23297 |||| | || ||||||| |||||| ||||||| ||||| Sbjct 53986 TACCTTGTAGTGATATAAGTTCCATCCAATCAAACGGATT 54025 >seq11595 Length=173172 Score = 167 bits (184), Expect = 2e-36 Identities = 397/594 (67%), Gaps = 7/594 (1%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || || ||||| || |||| |||||| || | | || || || || || || |||||| Sbjct 64868 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATTAACTCGTTTGAGAAAGTTAAT 64927 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAA 23627 || ||||| | ||||||||| || | ||| || || | |||||| | | ||||| ||||| Sbjct 64928 CCAGGCATGAGTCCTCGTTTCTTTAGCCAGAAGATAG-AGCAAAAGCTACCGGAGAAGAA 64986 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||||| |||||| || || || || | ||| | | || ||| | | | || Sbjct 64987 GATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCGAAGGTT---TGAGATCCATC 65043 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 ||||| | | | ||| | ||| ||| || || ||| |||||||| || Sbjct 65044 GATCCACGTCATCGCCCACTGAGCTTTCTTCGCAACGCAAGGAATAGTTTCAATAGCACG 65103 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 |||||| | | | |||| |||||| | ||||| ||||| | || | ||||||||| Sbjct 65104 AAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACAT 65163 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 |||||||||||||| ||||| || || || || || |||||| | || || || | Sbjct 65164 CTCAGAATGAATATTCTCAATCGCGATTTGGAATCCGTAAAAAGCACGCGCCTCCGAGAC 65223 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 ||| ||||| | |||| ||| | ||| || ||| || ||||| |||||| Sbjct 65224 TTGTACATCTGACATGAATCGAGAAGCGAGATTCTCTAAAACGATTCCATCTGAAGCAGC 65283 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTG-ATAATTTTTTCCAAT 23986 |||||||| || || | ||| ||||| || | ||| | || | || || | ||||| Sbjct 65284 GAAGAAAGCGAGGACGTGTTTGATAAAGTGACGTTC-GCCGTCGTTTAGATTCTCCCAAT 65342 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046 | |||| ||||| ||| ||||| ||| | ||||| || ||| ||| || Sbjct 65343 CGCGTCCGTCTTGTGATAGATCTACTTCTTCAGCAGTCCAGAACGATGCTTCGGCTTTCT 65402 Query 24047 TATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATCAG 24100 ||||||| ||| || | | || ||||| || || ||||||||||| Sbjct 65403 TATACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTATCAG 65456 >seq10889 Length=437650 Score = 86.0 bits (94), Expect = 7e-12 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 |||||||||||| || || || ||||||||| || |||||||||||| ||||| Sbjct 285852 TTGAACATCATTCAAGAACCTAGCAGCTAAATTCTCCAAAACAATACCATCTGATGCAGC 285911 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAGTTGATAATTTTTTCCA 23984 ||| ||||||||||||| ||||||||||| | || |||| || || ||| ||| Sbjct 285912 AAAAAAAGCAAGAACATGACTTATAAAATGTTTCTCTGAATCA---GACAACGTTTCCCA 285968 Query 23985 ATCATTAATATCTTTTGATAAATCAACTTCATCAACT 24021 | | | ||| |||| | |||||| || ||| || Sbjct 285969 TTGTTGCACATCCGTTGAAAGATCAACCTCTTCAGCT 286005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521411634601000