Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leavenworthia_20alabamica_20[genbank_20GCA_5F000411055.1_202013-06- 14] 11,715 sequences; 173,431,618 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq9990 111 1e-19 seq8641 111 1e-19 seq10212 107 2e-18 seq8848 104 2e-17 seq8634 104 2e-17 seq8379 104 2e-17 seq11021 102 8e-17 seq8798 100 3e-16 seq2888 98.7 9e-16 seq10330 95.1 1e-14 >seq9990 Length=160576 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || |||||||||||| || || |||| Sbjct 159196 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 159255 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||||||||| || |||| | ||| ||||||| ||| Sbjct 159256 AAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGA 159315 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| ||||| |||||| |||| ||| | | | |||||| |||||| Sbjct 159316 ATACCCTCTTTGTCTTGGATTTTGGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCCAC 159374 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 159375 CTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 159422 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||| | Sbjct 158512 CCACCACGGAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCC 158571 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 158572 AAAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 158631 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTC---GCTCGACTC 41811 | | ||| |||||| ||| || ||||| | | || ||||| |||| || Sbjct 158632 ATACCCTCTTTGTCCTGGATCTTGGCCTTCA-CATTGTCAATCGTGTCAGAGCTC---TC 158687 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || ||||| ||||| || ||||||||||| Sbjct 158688 CACCTCCAGTGTGATGGTCTTCCCGGTCAGTGTCTTCACAAAAATCTGCAT 158738 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || |||||||||||| || || || | Sbjct 158968 CCTCCACGAAGACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGCC 159027 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 159028 AAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 159087 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| | | || | || |||| ||| | | | |||||| |||||| Sbjct 159088 ATGCCTTCCTTAT-CTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCAC 159146 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| |||| ||||| ||||| || ||||| Sbjct 159147 CTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 159194 >seq8641 Length=178042 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || |||||||||||| || || |||| Sbjct 1381 CCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCGGCC 1322 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||||||||| || |||| | ||| ||||||| ||| Sbjct 1321 AAGGTACGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCCGGTGGA 1262 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| ||||| |||||| |||| ||| | | | |||||| |||||| Sbjct 1261 ATACCCTCTTTGTCTTGGATTTTGGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCCAC 1203 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 1202 CTCGAGCGTAATGGTCTTACCAGTCAAAGTCTTCACGAAGATTTGCAT 1155 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||| | Sbjct 2065 CCACCACGGAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCC 2006 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 2005 AAAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1946 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA-GTGTC---GCTCGACTC 41811 | | ||| |||||| ||| || ||||| | | || ||||| |||| || Sbjct 1945 ATACCCTCTTTGTCCTGGATCTTGGCCTTCA-CATTGTCAATCGTGTCAGAGCTC---TC 1890 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || ||||| ||||| || ||||||||||| Sbjct 1889 CACCTCCAGTGTGATGGTCTTCCCGGTCAGTGTCTTCACAAAAATCTGCAT 1839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || |||||||||||| || || || | Sbjct 1609 CCTCCACGAAGACGCAAGACCAAGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGCC 1550 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 1549 AAGGTACGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 1490 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| | | || | || |||| ||| | | | |||||| |||||| Sbjct 1489 ATGCCTTCCTTAT-CTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCCAC 1431 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || ||||| |||| ||||| ||||| || ||||| Sbjct 1430 CTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 1383 >seq10212 Length=148016 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| ||||| |||||||| ||||| ||||| | | Sbjct 127836 CCACCACGGAGACGGAGAACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAGTCAGCG 127777 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||| || |||||||| |||| || || || |||| || Sbjct 127776 AGAGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAACGTTGCTGATCCGGTGGG 127717 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || |||| || | | | ||||| ||||| || Sbjct 127716 ATGCCTTCCTTGTCTTGGATCTTA-GCTTTCACATTGTCGATGGTGTCAGAGGACTCAAC 127658 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || ||||||||||| || || || ||||| |||||||| || Sbjct 127657 CTCAAGTGTGATTGTTTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 127607 >seq8848 Length=112532 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||||| ||||| ||||| | Sbjct 94603 CCACCACGGAGACGGAGGACGAGATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCT 94544 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||| || ||||||||||||| ||||| ||||||| || Sbjct 94543 AGAGTACGGCCATCTTCGAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGG 94484 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || | || |||| || | | | ||||| ||||| || Sbjct 94483 ATACCTTCCTTGT-CTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGATGACTCAAC 94425 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || |||||||| || || || ||||| |||||||| || Sbjct 94424 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 94374 >seq8634 Length=210279 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||||| ||||| ||| ||||| |||||||| ||||| || |||| ||| || | Sbjct 12026 AGACGTAGCACCAAATGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCGAGAGTCCTT 12085 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || | || || ||||||||||||| ||||| || |||| || | | ||| Sbjct 12086 CCGTCTTCTAATTGTTTTCCGGCGAATATCAATCGCTGCTGATCCGGTGGGATTCCTTCC 12145 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | || |||| || | | | |||||| || || ||||| | || Sbjct 12146 TTGT-CTTGGATCTTCGCTTTCACATTGTCGATTGTGTCGGATGATTCAACCTCTAGGGT 12204 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || ||||| || || || ||||| |||||||| Sbjct 12205 TATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12243 >seq8379 Length=157374 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||||| ||||| ||||| | Sbjct 116309 CCACCACGGAGACGGAGGACGAGATGTAGAGTCGATTCCTTCTGGATGTTGTAGTCAGCT 116250 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||| || ||||||||||||| ||||| ||||||| || Sbjct 116249 AGAGTACGGCCATCTTCGAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGG 116190 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | || | || |||| || | | | ||||| ||||| || Sbjct 116189 ATACCTTCCTTGT-CTTGGATCTTCGCTTTGACATTGTCGATGGTGTCAGATGACTCAAC 116131 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || |||||||| || || || ||||| |||||||| || Sbjct 116130 CTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 116080 >seq11021 Length=502384 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| ||||| |||||||| ||||| ||||| | Sbjct 217150 CCACCACGGAGACGGAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCAGCC 217091 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || || || || ||||||||||||| ||||| ||||||| || Sbjct 217090 AGAGTACGGCCGTCTTCCAGTTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGT 217031 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| | || |||| || | | | ||||| ||||| || Sbjct 217030 ATTCCTTCCTTGT-CTTGAATCTTCGCTTTGACATTGTCGATGGTGTCAGAGGACTCAAC 216972 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || ||||| || || || ||||| |||||||| Sbjct 216971 CTCGAGAGTAATAGTCTTTCCCGTTAGGGTTTTCACGAAGATCTGCAT 216924 >seq8798 Length=192640 Score = 100 bits (110), Expect = 3e-16 Identities = 160/223 (72%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || | ||| || ||| |||||| |||||||| ||||| | ||| || | | Sbjct 21542 AGACGAAGTACTAAATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGTGTTCTC 21483 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGGAACGCTCTC 41763 | || || |||||||| ||||| || || || | ||| ||||||| |||| | || || Sbjct 21482 CCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCT-TC 21424 Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTC---GCTCGACTCCACCTCCA 41819 ||||||| ||| || ||| | || | || |||||| |||| || || |||| Sbjct 21423 CTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCAGAGCTC---TCAACTTCCA 21368 Query 41820 CCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || || || ||||| || ||||||||||| Sbjct 21367 AAGTGATTGTTTTGCCGGTAAGGGTCTTGACAAAAATCTGCAT 21325 >seq2888 Length=1483 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||||||| ||||| ||||| || ||||| ||||||| | Sbjct 170 CCACCACGGAGACGGAGCACCAGATGAAGCGTTGATTCCTTTTGGATGTTGTAGTCGGCG 111 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||| || ||||||||||||| ||||| ||||||| || Sbjct 110 AGAGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAATATCAATCGCTGCTGGTCCGGTGGG 51 Query 41756 ACGCTCTCCTTGTC 41769 | | |||||||| Sbjct 50 ATTCCTTCCTTGTC 37 >seq10330 Length=49715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || |||||||||| || || || ||| ||||| ||||||||||| | Sbjct 15460 CCACCACGGAGTCGTAACACCAAGTGAAGGGTCGACTCTTTCTGGATGTTATAGTCAGCT 15519 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 15520 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGG 15579 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||| ||| || | || |||| ||| | | | ||||| ||| ||| Sbjct 15580 ATACCTTCCTTATCC-TGGATCTTGGCTTTCACGTTGTCAATGGTGTCAGAGCT---CTC 15635 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || ||||| |||| ||||| || || || ||||| Sbjct 15636 CACCTCAAGGGTAATGGTCTTACCAGTCAAGGTCTTGACAAATATTTGCAT 15686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462236301358000