Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq26787 125 7e-24 >seq26787 Length=21907 Score = 125 bits (138), Expect = 7e-24 Identities = 306/456 (67%), Gaps = 7/456 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| |||||||| || || | || ||||||| ||| || ||||| || | Sbjct 16290 ACAGCAAACAGGCGAAATCACAGTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGA 16349 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || |||||| ||||| ||||| | ||| || || | | ||| || | Sbjct 16350 AGGTCAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGG 16409 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || || |||||| | || ||||| || | || || || | | | | | Sbjct 16410 AGAAGAAGATCCCTTCGACGCAGGCGAACGCTATCAGCCGCTCAGCAAAGGACTCCCCGC 16469 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || ||| |||||||| | |||||| || || | | | |||| ||||| || | Sbjct 16470 CGT--CGA-TCCATTTCAACGCCCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGA 16526 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGG 17254 | || || || |||||| || | | || | || || || |||| || ||| Sbjct 16527 TTGCGCGGAA-AAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGG 16585 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||||| |||||||| |||||||| || || ||||| || ||||| ||| || || Sbjct 16586 CTGTACATCTCGGAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCC 16645 Query 17315 TCCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || |||| || || ||| | || || | | || ||||| ||| ||||||||||| Sbjct 16646 TCGGCTACCTGGACCTCCTTCATA-AACCTGCCGGCGAGATTCTCGAGGACGATGCCGTC 16704 Query 17374 GCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 | |||||||| || || | | ||| | ||||| Sbjct 16705 GGAGGCGGCGAAGAAGGCGAGGACGTGCGTGATGAA 16740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517232504319960