Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq30174 87.8 1e-12 seq9568 82.4 6e-11 >seq30174 Length=20574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 19002 CAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATG 19061 |||||||||| || ||||| || | || |||||| | || ||| | || | |||||| Sbjct 15138 CAGTTTTACGCGGCGAACGGGGAGCTGTCGTGCCAAATGTATCAGCGGTCCGCTGATATG 15197 Query 19062 GGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCAT 19121 |||||||| || || |||||||||||| |||||||| || || | ||| | || ||| Sbjct 15198 GGCCTTGGTGTGCCTTTCAACATTGCTTCTTATGCACTCCTGACTTGCATGATTGCTCAT 15257 Query 19122 GTT 19124 ||| Sbjct 15258 GTT 15260 >seq9568 Length=20649 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 19002 CAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATG 19061 ||||||||||| || || || || | || || ||| | || ||| | || | |||||| Sbjct 4643 CAGTTTTACGTGGCGAATGGGGAGCTGTCGTGTCAAATGTATCAGCGGTCCGCTGATATG 4584 Query 19062 GGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCAT 19121 ||||| || || || |||||||||||| |||||||| || || ||||| | || ||| Sbjct 4583 GGCCTCGGTGTGCCTTTCAACATTGCTTCTTATGCACTCCTGACTTACATGATTGCTCAT 4524 Query 19122 GTT 19124 ||| Sbjct 4523 GTT 4521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399268357184865