Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq9952 84.2 2e-11 seq26443 82.4 7e-11 >seq9952 Length=36685 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || || |||||||| || || || || |||||| | ||| |||| ||| Sbjct 3799 GAGCAGCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGAT 3740 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||| || |||||||||||||| || || ||||||| |||| |||||||| Sbjct 3739 TACAACATCCAGAAGGAATCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGGG 3686 >seq26443 Length=10536 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 29020 |||||||| ||| |||| || |||| ||||| ||||| ||| || ||| | | || Sbjct 9047 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCAGC 8988 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| ||||| || || ||||| | || || || Sbjct 8987 -GACACCATTGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGGATACCACCGGACCA 8929 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | |||||||| || || || ||||| || || ||| |||| || ||||| Sbjct 8928 GCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCAGGACTCTGGCGGACTACAA 8869 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || ||||||||||| || |||||| | || ||||| | || |||||| Sbjct 8868 CATCCAGAAGGAATCAACCCTTCACCTTGTCTTACGTCTCCGTGGAGGG 8820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428083350963035