Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq9952 84.2 2e-11
seq26443 82.4 7e-11
>seq9952
Length=36685
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135
|| || || || || |||||||| || || || || |||||| | ||| |||| |||
Sbjct 3799 GAGCAGCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGAT 3740
Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
||||| || |||||||||||||| || || ||||||| |||| ||||||||
Sbjct 3739 TACAACATCCAGAAGGAATCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGGG 3686
>seq26443
Length=10536
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 29020
|||||||| ||| |||| || |||| ||||| ||||| ||| || ||| | | ||
Sbjct 9047 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCAGC 8988
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | || | ||| ||||| || || ||||| | || || ||
Sbjct 8987 -GACACCATTGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGGATACCACCGGACCA 8929
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|| || | |||||||| || || || ||||| || || ||| |||| || |||||
Sbjct 8928 GCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCAGGACTCTGGCGGACTACAA 8869
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189
|| ||||||||||| || |||||| | || ||||| | || ||||||
Sbjct 8868 CATCCAGAAGGAATCAACCCTTCACCTTGTCTTACGTCTCCGTGGAGGG 8820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428083350963035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |