Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq247 129 9e-25 seq6888 113 7e-20 seq5564 107 3e-18 seq756 100 4e-16 seq14506 95.1 2e-14 >seq247 Length=47399 Score = 129 bits (142), Expect = 9e-25 Identities = 168/231 (73%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| | ||||| || || ||||| || || ||| | ||| | || Sbjct 33426 AATGCAGATATTCGTGAAGACCCTTACTGGCAAGACCATTACTTTGGAGGTGGAGAGTTC 33367 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | ||| ||||| |||||||| ||||| || || ||||||| Sbjct 33366 TGACACAATCGACAATGTGAAAGCCAAAAT-CAAGATAAGGAAGGGATTCCTCCTGATCG 33308 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||| || |||||||| || || | || ||| |||| || | | || ||||| Sbjct 33307 GCAAAGGCTGATATTTGCAGGGAAGCAGCTGGAAGATGGTCGGACCCTTGCGGACTATAA 33248 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| || || ||| | ||||||||| | ||| | |||||||| || Sbjct 33247 TATTCAAAAGGAGTCGACTCTCCATTTGGTTCTCCGTCTGCGAGGTGGAAT 33197 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||| || || || | ||| | ||| | Sbjct 34590 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCT 34531 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||| |||| |||| | ||| |||||||| || || ||||| || ||||||||||| Sbjct 34530 GATTCAATCGATAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCAG 34471 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || || | || ||| | ||||| | | || ||||| Sbjct 34470 CAAAGGCTGATCTTTGCTGGGAAGCAGCTTGAAGATGGCCGAACCCTGGCCGACTATAAC 34411 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || |||||| |||| | ||| | | ||||| || Sbjct 34410 ATCCAGAAGGAATCCACCTTGCATCTGGTCCTTCGTCTCAGGGGTGGGAT 34361 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| || || ||||| || || || | ||| ||||| Sbjct 33881 ATGCAGATATTCGTCAAGACTCTCACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCG 33822 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| || ||||| || || || || || || ||||| || Sbjct 33821 GACACCATCGACAACGTTAAAGCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 33762 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || ||||||||||| || | || || | | ||||| || Sbjct 33761 CAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTACAAC 33702 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || |||||| |||| | ||| | || ||||| || Sbjct 33701 ATCCAAAAGGAGTCCACCTTGCATCTGGTGCTTCGTCTTCGCGGTGGAAT 33652 >seq6888 Length=12617 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| ||||| ||||| || || || | ||| ||||| Sbjct 7438 ATGCAAATCTTCGTCAAGACTCTAACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCC 7379 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | |||| || ||||| ||||| || || || || ||||| || Sbjct 7378 GACACTATTGATAATGTCAAACCCAAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAG 7319 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || ||||||||||| || | || || | | |||| || Sbjct 7318 CAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTGCAAC 7259 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||| || || || |||||| |||| | ||| | || ||||| || Sbjct 7258 ATCTAAAAGGAGTCCACCTTGCATCTGGTGCTTCGTCTTCGTGGTGGAAT 7209 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | ||| ||||| | Sbjct 7666 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCTTGGAGGTTGAAAGCTAG 7607 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| |||||||| || || ||||| || ||||||||||| Sbjct 7606 GACACCATTGACAACGTTAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCAC 7547 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | || ||| ||||||| | | || ||||| Sbjct 7546 CAGAGGCTGATCTTTGCTGGGAAGCAGCTTGAAGATGGTCGAACCCTGGCCGACTATAAC 7487 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || |||||| |||| | ||| | | ||||| || Sbjct 7486 ATCCAGAAGGAATCCACCTTGCATCTGGTCCTTCGTCTCAGGGGTGGGAT 7437 >seq5564 Length=26244 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| ||||| || || || || || | ||| |||| ||| Sbjct 4889 ATGCAAATTTTTGTCAAGACCCTAACTGGAAAGACAATCACCCTTGAGGTTGAGAGCTC- 4947 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| ||||| ||| | || || || ||||| || || || || ||||| || || Sbjct 4948 TGACACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGACCA 5007 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||| || ||||| ||||| || | |||||| | |||| |||| || ||||| Sbjct 5008 ACAAAGGCTCATCTTTGCCGGAAAGCAGCTTGAGGATGGAAGAACTTTAGCTGACTATAA 5067 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || ||||| | ||| | || |||||||| Sbjct 5068 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGTAT 5118 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | |||||||| || || || || || ||| | ||| | || || | Sbjct 5117 ATGCAAATCTTCGTGAAGACACTGACTGGGAAGACCATTACTTTGGAGGTCGAGAGTTCA 5176 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || |||||||| || || ||||| || || ||||| Sbjct 5177 -GATACCATTGACAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCCCCGGATCA 5235 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | ||||||||||| || || | |||||| | | || || | ||| || || Sbjct 5236 GCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAGGATGGGAGGACTTTGGCAGACTACAA 5295 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| ||||| | |||||||| | ||| | ||||| ||||| Sbjct 5296 CATCCAGAAAGAGTCAACCCTCCATTTGGTCCTGCGTCTGCGAGGAGGTAT 5346 >seq756 Length=57245 Score = 100 bits (110), Expect = 4e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | |||||| | || || ||||| ||||| | ||| | || ||| Sbjct 50692 ATGCAGATATTTGTGAAGACATTGACTGGGAAAACAATAACCTTGGAGGTGGAGAGCTCG 50633 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || | ||| ||||||||||| || || ||||| || || || || Sbjct 50632 -GACACAATTGACAACGTGAAAGCTAAAATTCAAGACAAGGAGGGTATCCCGCCAGACCA 50574 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | ||||||||||| || || || || ||| | || || | | || ||||| Sbjct 50573 ACAGAGATTGATTTTTGCAGGGAAGCAGTTGGAAGATGGACGTACTCTTGCGGACTATAA 50514 Query 124718 TATTCAAAAAGAATCAACTTTGCA 124741 ||| || || || || |||||||| Sbjct 50513 TATCCAGAAGGAGTCTACTTTGCA 50490 >seq14506 Length=85774 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | |||||| | || || ||||| |||||| | ||| | || ||| Sbjct 52173 ATGCAGATATTTGTGAAGACATTGACTGGGAAAACAATAACTTTGGAGGTGGAGAGCTCG 52114 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || | || ||||||||||| || || ||||| || || || || Sbjct 52113 -GACACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATCCCGCCAGACCA 52055 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | ||||||||||| || || || || ||| | || || | | || ||||| Sbjct 52054 ACAGAGATTGATTTTTGCAGGGAAGCAGTTGGAAGATGGACGCACTCTTGCGGACTATAA 51995 Query 124718 TATTCAAAAAGAATCAACTTTGCA 124741 ||| || || || || ||| |||| Sbjct 51994 TATCCAGAAGGAGTCGACTCTGCA 51971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754998977449600