Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq247 129 9e-25
seq6888 113 7e-20
seq5564 107 3e-18
seq756 100 4e-16
seq14506 95.1 2e-14
>seq247
Length=47399
Score = 129 bits (142), Expect = 9e-25
Identities = 168/231 (73%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| ||||| | ||||| || || ||||| || || ||| | ||| | ||
Sbjct 33426 AATGCAGATATTCGTGAAGACCCTTACTGGCAAGACCATTACTTTGGAGGTGGAGAGTTC 33367
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| ||||| ||| | ||| ||||| |||||||| ||||| || || |||||||
Sbjct 33366 TGACACAATCGACAATGTGAAAGCCAAAAT-CAAGATAAGGAAGGGATTCCTCCTGATCG 33308
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||||||| || |||||||| || || | || ||| |||| || | | || |||||
Sbjct 33307 GCAAAGGCTGATATTTGCAGGGAAGCAGCTGGAAGATGGTCGGACCCTTGCGGACTATAA 33248
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||||||| || || ||| | ||||||||| | ||| | |||||||| ||
Sbjct 33247 TATTCAAAAGGAGTCGACTCTCCATTTGGTTCTCCGTCTGCGAGGTGGAAT 33197
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || ||||| || || || | ||| | ||| |
Sbjct 34590 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCT 34531
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||| |||| |||| | ||| |||||||| || || ||||| || |||||||||||
Sbjct 34530 GATTCAATCGATAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCAG 34471
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||| || ||||| || || || | || ||| | ||||| | | || |||||
Sbjct 34470 CAAAGGCTGATCTTTGCTGGGAAGCAGCTTGAAGATGGCCGAACCCTGGCCGACTATAAC 34411
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || ||||| || |||||| |||| | ||| | | ||||| ||
Sbjct 34410 ATCCAGAAGGAATCCACCTTGCATCTGGTCCTTCGTCTCAGGGGTGGGAT 34361
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| ||||| | ||||| || || ||||| || || || | ||| |||||
Sbjct 33881 ATGCAGATATTCGTCAAGACTCTCACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCG 33822
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || || | ||| || ||||| || || || || || || ||||| ||
Sbjct 33821 GACACCATCGACAACGTTAAAGCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 33762
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||| || ||||| || ||||||||||| || | || || | | ||||| ||
Sbjct 33761 CAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTACAAC 33702
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || || || |||||| |||| | ||| | || ||||| ||
Sbjct 33701 ATCCAAAAGGAGTCCACCTTGCATCTGGTGCTTCGTCTTCGCGGTGGAAT 33652
>seq6888
Length=12617
Score = 113 bits (124), Expect = 7e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| ||||| ||||| || || || | ||| |||||
Sbjct 7438 ATGCAAATCTTCGTCAAGACTCTAACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCC 7379
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| |||| | |||| || ||||| ||||| || || || || ||||| ||
Sbjct 7378 GACACTATTGATAATGTCAAACCCAAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAG 7319
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||||| || ||||| || ||||||||||| || | || || | | |||| ||
Sbjct 7318 CAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTGCAAC 7259
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| |||| || || || |||||| |||| | ||| | || ||||| ||
Sbjct 7258 ATCTAAAAGGAGTCCACCTTGCATCTGGTGCTTCGTCTTCGTGGTGGAAT 7209
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| || || || || || || || | ||| ||||| |
Sbjct 7666 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCTTGGAGGTTGAAAGCTAG 7607
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| || | ||| |||||||| || || ||||| || |||||||||||
Sbjct 7606 GACACCATTGACAACGTTAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCAC 7547
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||||| || ||||| || || || | || ||| ||||||| | | || |||||
Sbjct 7546 CAGAGGCTGATCTTTGCTGGGAAGCAGCTTGAAGATGGTCGAACCCTGGCCGACTATAAC 7487
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || ||||| || |||||| |||| | ||| | | ||||| ||
Sbjct 7486 ATCCAGAAGGAATCCACCTTGCATCTGGTCCTTCGTCTCAGGGGTGGGAT 7437
>seq5564
Length=26244
Score = 107 bits (118), Expect = 3e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| ||| | ||||| ||||| || || || || || | ||| |||| |||
Sbjct 4889 ATGCAAATTTTTGTCAAGACCCTAACTGGAAAGACAATCACCCTTGAGGTTGAGAGCTC- 4947
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| ||||| ||| | || || || ||||| || || || || ||||| || ||
Sbjct 4948 TGACACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCACCAGACCA 5007
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||||||| || ||||| ||||| || | |||||| | |||| |||| || |||||
Sbjct 5008 ACAAAGGCTCATCTTTGCCGGAAAGCAGCTTGAGGATGGAAGAACTTTAGCTGACTATAA 5067
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || || | || ||||| | ||| | || ||||||||
Sbjct 5068 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGTAT 5118
Score = 107 bits (118), Expect = 3e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| || | |||||||| || || || || || ||| | ||| | || || |
Sbjct 5117 ATGCAAATCTTCGTGAAGACACTGACTGGGAAGACCATTACTTTGGAGGTCGAGAGTTCA 5176
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| ||| | || || |||||||| || || ||||| || || |||||
Sbjct 5177 -GATACCATTGACAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATTCCCCCGGATCA 5235
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||| | ||||||||||| || || | |||||| | | || || | ||| || ||
Sbjct 5236 GCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAGGATGGGAGGACTTTGGCAGACTACAA 5295
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || ||||| ||||| | |||||||| | ||| | ||||| |||||
Sbjct 5296 CATCCAGAAAGAGTCAACCCTCCATTTGGTCCTGCGTCTGCGAGGAGGTAT 5346
>seq756
Length=57245
Score = 100 bits (110), Expect = 4e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| |||||| | |||||| | || || ||||| ||||| | ||| | || |||
Sbjct 50692 ATGCAGATATTTGTGAAGACATTGACTGGGAAAACAATAACCTTGGAGGTGGAGAGCTCG 50633
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| |||||| || | ||| ||||||||||| || || ||||| || || || ||
Sbjct 50632 -GACACAATTGACAACGTGAAAGCTAAAATTCAAGACAAGGAGGGTATCCCGCCAGACCA 50574
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| || | ||||||||||| || || || || ||| | || || | | || |||||
Sbjct 50573 ACAGAGATTGATTTTTGCAGGGAAGCAGTTGGAAGATGGACGTACTCTTGCGGACTATAA 50514
Query 124718 TATTCAAAAAGAATCAACTTTGCA 124741
||| || || || || ||||||||
Sbjct 50513 TATCCAGAAGGAGTCTACTTTGCA 50490
>seq14506
Length=85774
Score = 95.1 bits (104), Expect = 2e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| |||||| | |||||| | || || ||||| |||||| | ||| | || |||
Sbjct 52173 ATGCAGATATTTGTGAAGACATTGACTGGGAAAACAATAACTTTGGAGGTGGAGAGCTCG 52114
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| |||||| || | || ||||||||||| || || ||||| || || || ||
Sbjct 52113 -GACACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATCCCGCCAGACCA 52055
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| || | ||||||||||| || || || || ||| | || || | | || |||||
Sbjct 52054 ACAGAGATTGATTTTTGCAGGGAAGCAGTTGGAAGATGGACGCACTCTTGCGGACTATAA 51995
Query 124718 TATTCAAAAAGAATCAACTTTGCA 124741
||| || || || || ||| ||||
Sbjct 51994 TATCCAGAAGGAGTCGACTCTGCA 51971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 754998977449600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |