Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq9568 118 8e-22 seq30174 100 2e-16 >seq9568 Length=20649 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || |||||||| || ||| || ||||||||||||||||||| || |||||||||||| Sbjct 4643 CAGTTTTACGTGGCGAATGGGGAGCTGTCGTGTCAAATGTATCAGCGGTCCGCTGATATG 4584 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || || ||||| |||||||| ||||| |||||| || || || || |||||||| ||| Sbjct 4583 GGCCTCGGTGTGCCTTTCAACATTGCTTCTTATGCACTCCTGACTTACATGATTGCTCAT 4524 Query 20551 GTT 20553 ||| Sbjct 4523 GTT 4521 >seq30174 Length=20574 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 20456 TGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTG 20515 ||||||| ||||||||||| || |||||||||||||| || ||||| |||||||| |||| Sbjct 15163 TGTCGTGCCAAATGTATCAGCGGTCCGCTGATATGGGCCTTGGTGTGCCTTTCAACATTG 15222 Query 20516 CAAGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 | |||||| || || || | |||||||| |||||| Sbjct 15223 CTTCTTATGCACTCCTGACTTGCATGATTGCTCATGTT 15260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398948545933165