Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq19360 95.1 9e-15 seq8519 95.1 9e-15 seq26443 84.2 2e-11 seq247 84.2 2e-11 >seq19360 Length=6746 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| ||||| || |||| |||||| || ||||| || |||||||||||||| || Sbjct 5118 TCCTCCCCTAAGTCTCAGCACCAAGTGAAGCGTGGATTCCTTCTGAATGTTGTAGTCAGC 5177 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||||||| || || ||| |||| || || || ||||| || Sbjct 5178 TAGGGTTCGCCCATCTTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGAGG 5237 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 5238 AATCCCTTCCTTGTC 5252 >seq8519 Length=37620 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| ||||| || |||| |||||| || ||||| || |||||||||||||| || Sbjct 7734 TCCTCCCCTAAGTCTCAGCACCAAGTGAAGCGTGGATTCCTTCTGAATGTTGTAGTCAGC 7675 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||||||| || || ||| |||| || || || ||||| || Sbjct 7674 TAGGGTTCGCCCATCTTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGAGG 7615 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 7614 AATCCCTTCCTTGTC 7600 >seq26443 Length=10536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||| || || | |||| || | |||||| |||||||| || || ||||||||||| || Sbjct 8821 CCTCCACGGAGACGTAAG-ACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGC 8879 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | | || |||| || || || ||| |||| | || || || ||| || Sbjct 8880 CAGAGTCCTGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 8939 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || |||| |||||| | ||| ||||| | | ||| Sbjct 8940 TATCCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATGGTGTCGCTGCTCTCCAC 8999 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| |||| || || || || |||||||| Sbjct 9000 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 9047 >seq247 Length=47399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||||||| | || |||| || || || || || ||||| || || ||||| || Sbjct 33426 TCCACCCCGTAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGC 33485 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || |||||| | ||| ||||| ||| |||| || ||||| || ||| || Sbjct 33486 AAGGGTCCGACCATCTTCAAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGG 33545 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||||| | ||| || | ||| ||||| | || Sbjct 33546 GATTCCCTCCTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTAC 33605 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | || || || | ||||||||||| ||||||||| Sbjct 33606 TTCCAGAGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATTTGCATT 33654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379120248327765