Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq26787 143 3e-29 seq19144 98.7 1e-15 seq2295 93.3 5e-14 seq11816 89.7 6e-13 >seq26787 Length=21907 Score = 143 bits (158), Expect = 3e-29 Identities = 245/350 (70%), Gaps = 8/350 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| |||||| |||||||| ||||||||||| ||||||| || | ||||| || | Sbjct 16290 ACAGCAAACAGGCGAAATCACAGTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGA 16349 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || ||||| ||||| | || ||||| || ||||| || || || ||| ||||| Sbjct 16350 AGGTCAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGG 16409 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCG 33749 | |||||||| ||||| || ||| || || || || || | ||| || | || | || Sbjct 16410 AGAAGAAGATCCCTTCGAC-GCAGGCGAACGCTATCAGCCGCTCAGCAAAGGACTCCCCG 16468 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| || ||||| | |||||||| || ||||| ||||| || Sbjct 16469 CCGTC---GATCCATTTCAACGCCCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCG 16525 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || || || || | ||||||| || ||| || | || || |||| || || Sbjct 16526 ATTGCGCGGAAAAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGG 16585 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 || ||||| || || |||||||| ||||| || ||||| || |||||||| Sbjct 16586 CTGTACATCTCGGAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAA 16635 >seq19144 Length=21831 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 ||||| ||||| | |||| ||| || | |||| | || || ||||| |||| ||| || Sbjct 18283 CCTCCTTGATCAACATATCGAGCAGTATCATTAAACACCCTTAACATGGGAACAATGCCA 18224 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| ||||| || || |||||| | |||| ||||||| |||||| || || Sbjct 18223 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 18164 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| || || || || ||| ||| | || || |||| ||| ||||| || Sbjct 18163 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 18104 Query 63603 CCTTCTATGCTATCATCGATCATG 63626 ||||| ||||||||||| ||||| Sbjct 18103 CCTTCAATGCTATCATCCTTCATG 18080 >seq2295 Length=9791 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 ||||| ||||| | |||| ||| || | ||| | || || ||||| |||| ||| || Sbjct 7462 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCTTAACATGGGAACAATGCCA 7521 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 || ||| ||||| || || |||||| | |||| ||||||| |||||| || || Sbjct 7522 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 7581 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602 | ||| || || || || ||| ||| | || || |||| ||| ||||| || Sbjct 7582 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 7641 Query 63603 CCTTCTATGCTATCATCGATCATG 63626 ||||| ||||||||||| ||||| Sbjct 7642 CCTTCGATGCTATCATCCTTCATG 7665 >seq11816 Length=7084 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| |||||||| ||||||||||| |||| ||| ||||| ||||| | | Sbjct 2904 CAAGCAAAATCACAGTGCAGGCCCTCGTCTCTGGATATTAGTTCATTAGAGAACGTCAAT 2963 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33678 || ||||| ||||| | |||||||||||| || |||| Sbjct 2964 CCTGGCATCAGGCCCCTCTTTTTAAGCCAGAAAATGG 3000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629436583970160