Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq9568 95.1 1e-14 seq30174 86.0 5e-12 >seq9568 Length=20649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 || ||||| |||| || |||||||| || || || ||||| || || || |||||| Sbjct 4522 ACATGAGCAATCATGTAAGTCAGGAGTGCATAAGAAGCAATGTTGAAAGGCACACCGAGG 4581 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 ||||| || ||||||| ||| |||| || || ||||||||||| |||||||||||| Sbjct 4582 CCCATATCAGCGGACCGCTGATACATTTGACACGACAGCTCCCCATTCGCCACGTAAAAC 4641 Query 21120 TG 21121 || Sbjct 4642 TG 4643 >seq30174 Length=20574 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 || ||||| |||| | |||||||| || || || ||||| || || || || ||| Sbjct 15259 ACATGAGCAATCATGCAAGTCAGGAGTGCATAAGAAGCAATGTTGAAAGGCACACCAAGG 15200 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 ||||| || ||||||| ||| |||| ||||| ||||||||||| ||| |||||||| Sbjct 15199 CCCATATCAGCGGACCGCTGATACATTTGGCACGACAGCTCCCCGTTCGCCGCGTAAAAC 15140 Query 21120 TG 21121 || Sbjct 15139 TG 15138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427523681272560