Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5564 107 2e-18 seq26443 105 7e-18 seq9418 102 8e-17 seq9952 93.3 4e-14 seq25669 89.7 5e-13 seq23362 84.2 2e-11 seq247 82.4 8e-11 >seq5564 Length=26244 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| |||||||| || || |||||||| || || || ||| || || Sbjct 4413 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCAGCCAAGGTTCTCCCATCCTCA 4354 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| |||| || ||||||||||| || || ||||| || ||||| | Sbjct 4353 AGCTGCTTTCCTGCAAAGATAAGTCGTTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGG 4294 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | ||||| | | || ||||| | ||| | ||||| Sbjct 4293 ATCTTGGCTTTAACATTGTCGATAGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTCTTT 4234 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| |||||||||||||| Sbjct 4233 CCGGTGAGGGTTTTCACGAATATTTGCAT 4205 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| |||||||||||||| || | ||||| || | ||||| || || || || Sbjct 5541 GTGGACTCCTTTTGAATGTTATAGTCAGCAAGTGTGCGTCCA-TCTTCCAGTTGCTTCCC 5483 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||| || | ||||| || || || || || |||||||| |||||| ||| Sbjct 5482 TGCAAAGATTAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTAGCTTT 5423 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||||||||| | ||| | || || || ||||| || Sbjct 5422 CACATTGTCAATCGTGTCCGAGTTCTCCACCTCCAGGGTGATGGTTTTTCCTGTCAAAGT 5363 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || || || || |||||| || Sbjct 5362 CTTCACAAAAATCTGCATACCT 5341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| || ||||| || ||||||||||| || || || ||| || || Sbjct 4869 ACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCTGCCAAGGTTCTCCCATCCTCA 4810 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || |||||| |||||| | |||||||| || || || || || ||||| | Sbjct 4809 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCTTGG 4750 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || ||| ||| | | || | ||||||| | ||| ||||||| || | ||||| Sbjct 4749 ATCTTTGCTTTAACATTGTCAATCGTGTCGGAGCTCTCAACCTCAAGTGTAATTGTCTTT 4690 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || || || ||||| Sbjct 4689 CCAGTTAGGGTCTTCACAAAGATCTGCAT 4661 >seq26443 Length=10536 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| || || | ||||| || || || || || ||||| || || | Sbjct 8821 CCTCCACGGAGACGTAAGACAAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCC 8880 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| || ||||| ||||| ||| |||||| | ||||| || || ||| Sbjct 8881 AGAGTCCTGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGT 8940 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| || | | || | |||||| || ||||||| Sbjct 8941 ATCCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATGGTGTCGCTGCTCTCCACC 9000 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| ||| | |||||||| |||| || || ||||| ||||||||| || Sbjct 9001 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATACCT 9051 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||| |||||| || || | |||||| ||||| |||||| Sbjct 9079 GTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCGTCTTCCAGCTGCTTACCA 9138 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| | ||||| || || || || || || ||||| ||| ||| || Sbjct 9139 GCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTG 9198 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| || ||||||||| | ||| | ||||||||||||| || Sbjct 9199 ACGTTGTCGATGGTGTCACTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTC 9258 Query 139748 TTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 9259 TTCACAAAGATTTGCATA 9276 >seq9418 Length=21897 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||||| || ||||| || || ||||| || ||| | Sbjct 11778 CCTCCACGGAGACGCAGGACAAGGTGAAGGGTCGACTCCTTCTGTATGTTGTAGTCGGCC 11719 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| ||||| || || || |||| || | |||||||| || || Sbjct 11718 AAGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGTGGG 11659 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || || | | || | |||||| || ||||||| Sbjct 11658 ATTCCCTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCGCTGCTCTCCACC 11599 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||| ||| | |||||||| |||| || || || || ||||||||| || Sbjct 11598 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATACCT 11548 >seq9952 Length=36685 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || | || | |||||| || || || ||||| ||||| | Sbjct 3687 CCTCCTCTCAATCTCAACACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAATCAGCC 3746 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||||| || || ||| |||| || | ||||| || ||||| Sbjct 3747 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGCTCCGGAGGG 3806 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCC-ACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| || | || | |||| | | || | || |||| ||| || Sbjct 3807 ATGCCTTCCTTGTC-CTGTATCTTGGCTTTAACGTTGCCGATGGTATCGGAACTCTCAAC 3865 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||| | ||| || ||||| || ||||| Sbjct 3866 CTCGAGAGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 3913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || |||| || |||| || ||||| | || || || || || ||||| ||||| ||| Sbjct 3915 CCTCCTCTCAATCGCAGCACCAAGTGGAGAGTCGATTCCTTCTGGATGTTGTAATCAGCT 3974 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| || ||||| || || || |||| || | ||||| || ||||| Sbjct 3975 -AGAGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGG 4033 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 4034 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCGAC 4093 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTT 139769 ||| | ||| | ||||||||||| | ||||| ||||| || ||||||| || Sbjct 4094 CTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCATAGTTT 4146 >seq25669 Length=30460 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||||| || | || | || || || || || ||||| |||||| Sbjct 8317 CCTCCTCTCAAACGCAAGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAATCGGCG 8258 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| || || ||| |||| || | ||||| || ||||| Sbjct 8257 AGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 8198 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 8197 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCAGAGCTCTCGACC 8138 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTT 139769 || | ||| | ||||||||||| | ||||| ||||| || ||||||| || Sbjct 8137 TCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAAATCTGCATAGTTT 8086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || |||| || |||| || | |||| |||||| || || || ||||| ||||| ||| Sbjct 1493 CCTCCTCTCAATCGCAGCACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCCGCT 1552 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || |||||||| || || ||| |||| || | ||||||| ||||| Sbjct 1553 -AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCCGCTGATCCGGAGG 1611 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | || |||| ||| || Sbjct 1612 GATCCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTATCGGAACTCTCAAC 1671 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTT 139769 ||| | || | |||||||||||| | || || ||||| || ||||||| || Sbjct 1672 CTCGAGAGTAATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATAGTTT 1724 >seq23362 Length=32732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || ||||| || || || |||| ||| || ||||| Sbjct 20230 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCGTCCTCCAGCTG 20171 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||||||||||||||| || || || || ||||| ||||| ||| || Sbjct 20170 CTTCCCGGCGAAGATCAGACGTTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTT 20111 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | || ||| ||||| | ||| | || || ||||| Sbjct 20110 GGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTTTTCCCGGT 20051 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 20050 TAGGGTTTTCACGAAGATCTGCAT 20027 >seq247 Length=47399 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| || || | ||| | ||| | ||| | || |||||||| |||||||||||||| Sbjct 32751 ATAGCCACCACGGAGACGAAGAACAAGGTGCAGAGTGGACTCTTTCTGAATGTTATAATC 32810 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 || || | |||||| || || || || ||| ||||||| | |||||| || || Sbjct 32811 CGCCAGAGTCCGACCGTCTTCCAGTTGCTTGCCTGCAAAGATCAGCCTTTGCTGGTCCGG 32870 Query 139654 AGGTATGCCTTCTTTGTC 139671 ||| || ||||| ||||| Sbjct 32871 AGGAATCCCTTCCTTGTC 32888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495763899882400