Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 152 7e-32
seq19144 107 3e-18
seq2295 102 1e-16
seq11816 89.7 7e-13
seq36786 87.8 3e-12
>seq26787
Length=21907
Score = 152 bits (168), Expect = 7e-32
Identities = 388/586 (66%), Gaps = 6/586 (1%)
Strand=Plus/Plus
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| |||||| |||||||| ||||||||||| ||||||| || || |||||||| |
Sbjct 16290 ACAGCAAACAGGCGAAATCACAGTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGA 16349
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070
| || ||||| ||||| | || ||||| || ||||| || || || ||| || ||
Sbjct 16350 AGGTCAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATTGA-GCAGAAGCTTCCG 16408
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC 50128
|| |||||||| ||||| || ||| || || | || | ||| || | ||| | |
Sbjct 16409 GAGAAGAAGATCCCTTCGACGCAGGCGAACGCTATCAGCCGCTCAGCAAAGGACT--CCC 16466
Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188
| | | ||||| || ||||| | |||||||| || ||||| ||||| || |
Sbjct 16467 CGCCGTCGATCCATTTCAACGCCCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGA 16526
Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248
| || || || | ||||||| || ||| || | || || |||| || || |
Sbjct 16527 TTGCGCGGAAAAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGC 16586
Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308
| ||||| || || |||||||| ||||| || ||||| || |||||||| | ||||
Sbjct 16587 TGTACATCTCGGAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCT 16646
Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368
||| | ||| || || | ||| | | || | ||| || || || |||||
Sbjct 16647 CGGCTACCTGGACCTCCTTCATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGG 16706
Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428
||| || || || || | || || | || || || |||| || |||| |
Sbjct 16707 AGGCGGCGAAGAAGGCGAGGACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGT 16766
Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488
||| | | || | ||| | |||||| || || ||||||| || || || || |
Sbjct 16767 CCCAGTGGCGAACGTCCTGAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAG 16826
Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534
| || || ||||| | |||||| | | | |||| |||||||| ||
Sbjct 16827 CTTTCTTGTACATCTCCCAGATCTGAGGGTATTCAATTGGGAACAT 16872
>seq19144
Length=21831
Score = 107 bits (118), Expect = 3e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
||||| ||||| | |||| ||| || | |||| | || || ||||| |||| ||| |||
Sbjct 18283 CCTCCTTGATCAACATATCGAGCAGTATCATTAAACACCCTTAACATGGGAACAATGCCA 18224
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|| |||| ||||| || || |||||| |||||| ||||||| |||||| || ||
Sbjct 18223 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 18164
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| || || || || ||| ||| | || || |||| ||| ||||| ||
Sbjct 18163 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 18104
Query 80275 CCCTCTATGCTATCATCAATCATG 80298
|| || ||||||||||| |||||
Sbjct 18103 CCTTCAATGCTATCATCCTTCATG 18080
>seq2295
Length=9791
Score = 102 bits (112), Expect = 1e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
||||| ||||| | |||| ||| || | ||| | || || ||||| |||| ||| |||
Sbjct 7462 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCTTAACATGGGAACAATGCCA 7521
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|| |||| ||||| || || |||||| |||||| ||||||| |||||| || ||
Sbjct 7522 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 7581
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| || || || || ||| ||| | || || |||| ||| ||||| ||
Sbjct 7582 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 7641
Query 80275 CCCTCTATGCTATCATCAATCATG 80298
|| || ||||||||||| |||||
Sbjct 7642 CCTTCGATGCTATCATCCTTCATG 7665
>seq11816
Length=7084
Score = 89.7 bits (98), Expect = 7e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || ||||| |||||||| ||||||||||| |||||||| || || ||||| | |
Sbjct 2904 CAAGCAAAATCACAGTGCAGGCCCTCGTCTCTGGATATTAGTTCATTAGAGAACGTCAAT 2963
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056
|| ||||| ||||| | |||||||||||| || ||||
Sbjct 2964 CCTGGCATCAGGCCCCTCTTTTTAAGCCAGAAAATGG 3000
>seq36786
Length=236
Score = 87.8 bits (96), Expect = 3e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190
|| || ||||| |||| ||| ||||| |||| ||||| || || |||||| ||||||
Sbjct 4 ACCCTTAACATGGGAACAATGCCATTAGATGCCCCATTAGTTCCACGGATATAACTTCCA 63
Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250
||||||| |||||| || || | ||| || || || || ||| ||| | ||
Sbjct 64 GTGGCACGGATATTATGAACAGACACACCAATCCCTCCAGCAGATTTGCTGATAACAGCA 123
Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298
|| |||| ||| ||||| || || || ||||||||||| |||||
Sbjct 124 CACTCCTTTAGCGTCTCATATATTCCTTCAATGCTATCATCCTTCATG 171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717834274311080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |