Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq26787 152 7e-32 seq19144 107 3e-18 seq2295 102 1e-16 seq11816 89.7 7e-13 seq36786 87.8 3e-12 >seq26787 Length=21907 Score = 152 bits (168), Expect = 7e-32 Identities = 388/586 (66%), Gaps = 6/586 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| |||||||| ||||||||||| ||||||| || || |||||||| | Sbjct 16290 ACAGCAAACAGGCGAAATCACAGTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGA 16349 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || ||||| ||||| | || ||||| || ||||| || || || ||| || || Sbjct 16350 AGGTCAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATTGA-GCAGAAGCTTCCG 16408 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACTGGCGC 50128 || |||||||| ||||| || ||| || || | || | ||| || | ||| | | Sbjct 16409 GAGAAGAAGATCCCTTCGACGCAGGCGAACGCTATCAGCCGCTCAGCAAAGGACT--CCC 16466 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | | | ||||| || ||||| | |||||||| || ||||| ||||| || | Sbjct 16467 CGCCGTCGATCCATTTCAACGCCCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGA 16526 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | || || || | ||||||| || ||| || | || || |||| || || | Sbjct 16527 TTGCGCGGAAAAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGC 16586 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | ||||| || || |||||||| ||||| || ||||| || |||||||| | |||| Sbjct 16587 TGTACATCTCGGAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCT 16646 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 ||| | ||| || || | ||| | | || | ||| || || || ||||| Sbjct 16647 CGGCTACCTGGACCTCCTTCATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGG 16706 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 ||| || || || || | || || | || || || |||| || |||| | Sbjct 16707 AGGCGGCGAAGAAGGCGAGGACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGT 16766 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| | | || | ||| | |||||| || || ||||||| || || || || | Sbjct 16767 CCCAGTGGCGAACGTCCTGAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAG 16826 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 | || || ||||| | |||||| | | | |||| |||||||| || Sbjct 16827 CTTTCTTGTACATCTCCCAGATCTGAGGGTATTCAATTGGGAACAT 16872 >seq19144 Length=21831 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | |||| ||| || | |||| | || || ||||| |||| ||| ||| Sbjct 18283 CCTCCTTGATCAACATATCGAGCAGTATCATTAAACACCCTTAACATGGGAACAATGCCA 18224 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || |||| ||||| || || |||||| |||||| ||||||| |||||| || || Sbjct 18223 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 18164 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || || || || ||| ||| | || || |||| ||| ||||| || Sbjct 18163 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 18104 Query 80275 CCCTCTATGCTATCATCAATCATG 80298 || || ||||||||||| ||||| Sbjct 18103 CCTTCAATGCTATCATCCTTCATG 18080 >seq2295 Length=9791 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| ||||| | |||| ||| || | ||| | || || ||||| |||| ||| ||| Sbjct 7462 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCTTAACATGGGAACAATGCCA 7521 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || |||| ||||| || || |||||| |||||| ||||||| |||||| || || Sbjct 7522 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 7581 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || || || || ||| ||| | || || |||| ||| ||||| || Sbjct 7582 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 7641 Query 80275 CCCTCTATGCTATCATCAATCATG 80298 || || ||||||||||| ||||| Sbjct 7642 CCTTCGATGCTATCATCCTTCATG 7665 >seq11816 Length=7084 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| |||||||| ||||||||||| |||||||| || || ||||| | | Sbjct 2904 CAAGCAAAATCACAGTGCAGGCCCTCGTCTCTGGATATTAGTTCATTAGAGAACGTCAAT 2963 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056 || ||||| ||||| | |||||||||||| || |||| Sbjct 2964 CCTGGCATCAGGCCCCTCTTTTTAAGCCAGAAAATGG 3000 >seq36786 Length=236 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || || ||||| |||| ||| ||||| |||| ||||| || || |||||| |||||| Sbjct 4 ACCCTTAACATGGGAACAATGCCATTAGATGCCCCATTAGTTCCACGGATATAACTTCCA 63 Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 ||||||| |||||| || || | ||| || || || || ||| ||| | || Sbjct 64 GTGGCACGGATATTATGAACAGACACACCAATCCCTCCAGCAGATTTGCTGATAACAGCA 123 Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298 || |||| ||| ||||| || || || ||||||||||| ||||| Sbjct 124 CACTCCTTTAGCGTCTCATATATTCCTTCAATGCTATCATCCTTCATG 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717834274311080