Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq25669 89.7 4e-13 seq9952 89.7 4e-13 seq756 84.2 2e-11 >seq25669 Length=30460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | |||| ||||| ||| ||||| || | ||||||||||| | Sbjct 1265 CCTCCACGGAGCCTCAGTACCAGATGGAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 1324 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || |||||||| |||||||||||||| ||||| | || Sbjct 1325 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGAGGA 1384 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | ||| || | ||| || Sbjct 1385 ATTCCTTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATTGTTTCATAACTCTCAACC 1444 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || || || ||||| || ||||| Sbjct 1445 TCGAGAGTAATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1491 >seq9952 Length=36685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || |||| || | ||| | ||| |||||| || | |||||| |||| Sbjct 3459 CCTCCACGGAGCCTTAGTACTAGATGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCT 3518 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || ||||| || |||||||||||||| ||||| | || Sbjct 3519 AGGGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAAATCAATCGCTGCTGATCCGGAGGA 3578 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||| || || |||| | ||||| || | | ||||| ||| |||||| Sbjct 3579 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTC-AGAGCTCTCGAC 3637 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || || || || || || ||||| Sbjct 3638 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 3685 >seq756 Length=57245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||| || || | | |||||| | || ||||| || || || ||||| Sbjct 50501 CTCCTTCTGGATATTATAGTCCGCAAGAGTACGTCCATCTTCCAACTGCTTCCCTGCAAA 50560 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||||| |||||| || | ||| | ||| || || || || |||| || | Sbjct 50561 AATCAATCTCTGTTGGTCTGGCGGGATACCCTCCTTGTCTTGAATTTTAGCTTTCACGTT 50620 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| |||||| | ||| ||| || || | ||||| ||||| || || | || |||| Sbjct 50621 GTCAATTGTGTC-CGAGCTCTCCACCTCCAAGGTTATTGTTTTCCCAGTCAATGTCTTCA 50679 Query 43097 CAAAAATTTGCAT 43109 |||| || ||||| Sbjct 50680 CAAATATCTGCAT 50692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381144653551026