Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq26787 158 2e-33 >seq26787 Length=21907 Score = 158 bits (174), Expect = 2e-33 Identities = 387/584 (66%), Gaps = 2/584 (0%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| |||||| |||||||| ||||||||||| || |||| || | |||||||| | Sbjct 16290 ACAGCAAACAGGCGAAATCACAGTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGA 16349 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || ||||| ||||| | || ||||| || ||||| || || || ||| || ||| Sbjct 16350 AGGTCAGTCCAGGCATCAACCCTCGCTTCTTCAGCCAGAAAATTGA-GCAGAAGCTTCCG 16408 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||| ||||| || || || || || || | ||| || | | | | Sbjct 16409 GAGAAGAAGATCCCTTCGACGCAGGCGAACGCTATCAGCCGCTCAGCAAAGGACTCCCCG 16468 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| || ||||| | |||||||| || ||||| ||||| || || Sbjct 16469 CCGTCGATCCATTTCAACGCCCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGATT 16528 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || || || | ||||||| || ||| || | || || |||| || || || Sbjct 16529 GCGCGGAAAAGGCGGCTTTTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTG 16588 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || |||||||| ||||| || ||||| || |||||||| | |||||| Sbjct 16589 TACATCTCGGAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCG 16648 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | ||||| || || | ||| | | || | ||| ||| || || ||||| | Sbjct 16649 GCTACCTGGACCTCCTTCATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAG 16708 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 || || || || || | || || | || || | ||||| | ||||| | | Sbjct 16709 GCGGCGAAGAAGGCGAGGACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTCC 16768 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || | | || | ||| | |||||| || || | ||||| || || ||||| || Sbjct 16769 CAGTGGCGAACGTCCTGAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCT 16828 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 || || ||||| | |||||| | | | |||| ||||||||| || Sbjct 16829 TTCTTGTACATCTCCCAGATCTGAGGGTATTCAATTGGGAACAT 16872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670733185951720