Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq45547 95.1 1e-14 seq9952 87.8 2e-12 >seq45547 Length=474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| || ||||| || |||||||||||||| Sbjct 212 CCACCACGCAGACGAAGGACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCAACA 271 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || || || || ||| | ||||| | |||||| || ||||| Sbjct 272 AGAGTCCTGCCATCTTCAAGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGAGGG 331 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 | || || ||||| |||||||| || | | || | ||||| | | ||| ||| Sbjct 332 ACCCCCTCCTTGTCCTGAATTTTTTCCTTCATATTATCAAGGGTGTCGGAGCTTTCCACT 391 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| || || || || ||||| || |||||||| Sbjct 392 TCCAGAGTGATAGTCTTTCCAGTGAAAGTCTTTACAAAGATTTGCAT 438 >seq9952 Length=36685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | ||| || | ||| | |||||||| || || ||||||||||| | Sbjct 3687 CCTCCTCTCAATCTCAACACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAATCAGCC 3746 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||| || || || ||| |||| || | ||||| || ||||| Sbjct 3747 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGCTCCGGAGGG 3806 Query 143078 ATGCCTTCTTTGT-CGGTAATTTTTTGTTTTAGCTGTTCC-ACCGTGTCCGTGGGTTCTA 143135 |||||||| |||| | ||| | || | |||| | | || | || || | || | Sbjct 3807 ATGCCTTCCTTGTCCTGTA--TCTTGGCTTTAACGTTGCCGATGGTATCGGAACTCTCAA 3864 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | |||||||||||| | || || ||||| || ||||| Sbjct 3865 CCTCGAGAGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 3913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506707675301040