Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq13309 159 5e-34 >seq13309 Length=30306 Score = 159 bits (176), Expect = 5e-34 Identities = 393/584 (67%), Gaps = 18/584 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| || | | | || ||||| |||||||| || || |||||||||| | Sbjct 5797 TGTTCCCAATCGAATACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCT 5856 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| ||||| ||||| || ||||| | | | ||||| | || |||| Sbjct 5857 GGACAGCCGAGGAGGTAGATCTCTCTCAGGACGTTCGCCACTGGGACGCC---TTAACTG 5913 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 ||||| | || || ||||| | | |||||||| |||| ||||| || |||| Sbjct 5914 CCGACGAGCGCCACTTCATCACGCACGTCCTCGCCTTCTTCGCCGCATCCGACGGCATCG 5973 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGT 125232 || || ||||| | | || | ||| | ||| | ||| | | |||| | ||| Sbjct 5974 TCCTTGAGAATCTCGCCGGCAGG-TTCATGAAGGAGGT--CCAGGTGGCCGAGGCG-CGT 6029 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| ||| |||||||||| | ||||| || |||||| ||| Sbjct 6030 GCCTTCTACGGCTTCCAGATCGCGATTGAGAACATTCACTCCGAGATGTACAGCCTCCTG 6089 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| ||| || || ||| | || || |||||||||||| Sbjct 6090 CTCGAGACCTACATCAAGGATTCGAAAGAAAAAAGCCGTCTGTTCCGTGCAATCGACACG 6149 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-C 125410 | || | | || ||||| || |||| | | |||||||| | || ||| | Sbjct 6150 ATTCCTTGCGTGGCGAAGAAGGCGCAGTGGGCGTTGAAATGGATCGACGGCGGGGAGTGC 6209 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 || | |||| || ||| | || |||||| ||| || || |||||||| || || || Sbjct 6210 TTTG----CCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAG 6265 Query 125471 TTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || ||| | || || ||||| ||||||||||| | ||||| ||| |||| | | Sbjct 6266 CTTCTGCT-CGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGA 6324 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||| | || || |||||||| ||||| |||||||| || ||| Sbjct 6325 ACGAGCTGATCTCGCGAGACGAAGGCCTGCACTGTGATTTCGCC 6368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740610886973720