Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq13309 159 5e-34
>seq13309
Length=30306
Score = 159 bits (176), Expect = 5e-34
Identities = 393/584 (67%), Gaps = 18/584 (3%)
Strand=Plus/Plus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
|||| || ||| || | | | || ||||| |||||||| || || |||||||||| |
Sbjct 5797 TGTTCCCAATCGAATACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCT 5856
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115
|||| | ||| ||||| ||||| || ||||| | | | ||||| | || ||||
Sbjct 5857 GGACAGCCGAGGAGGTAGATCTCTCTCAGGACGTTCGCCACTGGGACGCC---TTAACTG 5913
Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175
||||| | || || ||||| | | |||||||| |||| ||||| || ||||
Sbjct 5914 CCGACGAGCGCCACTTCATCACGCACGTCCTCGCCTTCTTCGCCGCATCCGACGGCATCG 5973
Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGT 125232
|| || ||||| | | || | ||| | ||| | ||| | | |||| | |||
Sbjct 5974 TCCTTGAGAATCTCGCCGGCAGG-TTCATGAAGGAGGT--CCAGGTGGCCGAGGCG-CGT 6029
Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291
|| || ||||| ||||| ||| |||||||||| | ||||| || |||||| |||
Sbjct 6030 GCCTTCTACGGCTTCCAGATCGCGATTGAGAACATTCACTCCGAGATGTACAGCCTCCTG 6089
Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351
| || | ||||| ||| || || ||| | || || ||||||||||||
Sbjct 6090 CTCGAGACCTACATCAAGGATTCGAAAGAAAAAAGCCGTCTGTTCCGTGCAATCGACACG 6149
Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-C 125410
| || | | || ||||| || |||| | | |||||||| | || ||| |
Sbjct 6150 ATTCCTTGCGTGGCGAAGAAGGCGCAGTGGGCGTTGAAATGGATCGACGGCGGGGAGTGC 6209
Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470
|| | |||| || ||| | || |||||| ||| || || |||||||| || || ||
Sbjct 6210 TTTG----CCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAG 6265
Query 125471 TTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529
|| ||| | || || ||||| ||||||||||| | ||||| ||| |||| | |
Sbjct 6266 CTTCTGCT-CGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGA 6324
Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
||||| | || || |||||||| ||||| |||||||| || |||
Sbjct 6325 ACGAGCTGATCTCGCGAGACGAAGGCCTGCACTGTGATTTCGCC 6368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740610886973720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |