Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq26443 100 2e-16 seq14506 100 2e-16 seq756 95.1 9e-15 seq37694 91.5 1e-13 seq247 91.5 1e-13 seq9418 84.2 2e-11 seq6888 84.2 2e-11 >seq26443 Length=10536 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||| |||| || | ||| ||||| || || || || |||||||||||| Sbjct 9049 CCTCCCCTCAGCCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 9108 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | ||||||| | || || |||||| | ||||| | || ||||| || Sbjct 9109 AAGGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGG 9168 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || ||||| || ||||| ||| || | || ||||| || || | || || Sbjct 9169 ATTCCCTCCTTGTCCTGGATCTTTGC-CTTGACGTTGTCGATGGTGTCACTGCTCTCCAC 9227 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || || |||||||| || ||||| ||||||||| Sbjct 9228 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAAGATTTGCATA 9276 >seq14506 Length=85774 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || ||||| || || || | ||| | || || Sbjct 52648 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTCCTCCCATCCTC 52707 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || || || | |||| |||||||| || ||||| || || ||||| Sbjct 52708 GAGCTGCTTTCCTGCAAAGATCAGCCGTTGTTGATCTGGGGGAATGCCCTCCTTGTCTTG 52767 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | || || || ||| | | || || || ||||||||||| || Sbjct 52768 TATCTTGGCCTTGACATTGTCGATTGTGTCGGAACTCTCAACCTCCAAGGTAATGGTCTT 52827 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| ||||| |||||||| Sbjct 52828 TCCAGTCAGAGTTTTCACAAAGATTTGCAT 52857 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || ||||| ||||||||||| || | | ||| | ||||| Sbjct 52193 ACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGTCTGCCAATGTCCTCCCATCTTCA 52252 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| || || | ||||| | || ||||| ||| || || || ||||| Sbjct 52253 AGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGT 52312 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || |||||||| | | || || || || || |||||||| Sbjct 52313 ATCTTTGC-CTTCACGTTATCGATGGTATCTGAACTCTCAACCTCCAAAGTTATGGTTTT 52371 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||||| || ||||| ||||||||| Sbjct 52372 CCCTGTCAGAGTCTTCACAAAGATTTGCATA 52402 >seq756 Length=57245 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || ||||| ||||||||||| || | | ||| | ||||| Sbjct 50712 ACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGTCTGCCAATGTCCTCCCATCTTCA 50771 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| || || | ||||| | || ||||| ||| || || || ||||| Sbjct 50772 AGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGT 50831 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || |||||||| | | || || || || || |||||||| Sbjct 50832 ATCTTTGC-CTTCACGTTATCGATGGTATCTGAACTCTCAACCTCCAAAGTTATGGTTTT 50890 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||||||| || ||||| |||| |||| Sbjct 50891 CCCTGTCAGAGTCTTCACAAAGATTTACATA 50921 >seq37694 Length=247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || ||||| || || || || || | | | ||||| Sbjct 2 AACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTC 61 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| |||||||| | |||| | ||| ||||| || ||||| || ||||| Sbjct 62 AAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTG 121 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || | || ||||| ||| ||||||| || | || ||||| || Sbjct 122 AATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 181 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| |||||||| Sbjct 182 TCCAGTGAGAGTTTTTACAAAGATTTGCAT 211 >seq247 Length=47399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || ||||| || || || || || | | | ||||| Sbjct 33444 AACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTC 33503 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| |||||||| | |||| | ||| ||||| || ||||| || ||||| Sbjct 33504 AAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTG 33563 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || | || ||||| ||| ||||||| || | || ||||| || Sbjct 33564 AATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 33623 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| |||||||| Sbjct 33624 TCCAGTGAGAGTTTTTACAAAGATTTGCAT 33653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| | |||||| || ||||| |||||||||||| || | | ||||||||||||| Sbjct 33678 ATGCAAGGTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCTTCTAATTG 33737 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 |||||| || | || | | ||| ||||| || || || || ||||| ||| || Sbjct 33738 TTTGCCCGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTT 33797 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || || | || ||||| || | |||| || || ||||| || || || || | Sbjct 33798 AGCT-TTAACGTTGTCGATGGTGTCCGAACTTTCAACCTCCAAGGTGATTGTCTTGCCGG 33856 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||| || || || || ||||| Sbjct 33857 TGAGAGTCTTGACGAATATCTGCAT 33881 >seq9418 Length=21897 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || ||||||||||| ||| | | | ||||||| | || Sbjct 11754 TGAAGGGTCGACTCCTTCTGTATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAGCTGC 11695 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | | || || || ||| ||||| |||||||| || || Sbjct 11694 TTTCCGGCGAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTGTCCTGGATCTTA 11635 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| ||||| | || || || | ||| ||||| || || ||| Sbjct 11634 GCCTTGACATTGTCAATGGTGTCGCTGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTC 11575 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||||||| Sbjct 11574 AGGGTCTTGACAAAGATTTGCATA 11551 >seq6888 Length=12617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| | |||||| || |||| |||||| ||||| || | | ||||||||||||| Sbjct 7235 ATGCAAGGTGGACTCCTTTTAGATGTTGCAATCGGCAAGGGTACGGCCGTCTTCTAATTG 7294 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | || | | ||| ||||| || || || || || || ||| || Sbjct 7295 TTTGCCCGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGAATCTT 7354 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || || || ||| | |||| || || ||||| || || || || || Sbjct 7355 GGGTTTGACATTATCAATAGTGTCGGAACTTTCAACCTCCAAGGTGATTGTCTTGCCGGT 7414 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || |||||||| Sbjct 7415 TAGAGTCTTGACGAAGATTTGCAT 7438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361965572786577