Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9418 93.3 3e-14 seq26443 89.7 4e-13 seq5564 84.2 2e-11 >seq9418 Length=21897 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | |||||||| || | || | ||||||||||| |||||||||||||| ||| Sbjct 11550 CCTCCCCTCAACCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 11491 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | ||||||| ||||| || || || | ||||| |||||||| ||| || Sbjct 11490 AATGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGG 11431 Query 18935 ACGCCCTCTTTGTC 18948 | ||||| ||||| Sbjct 11430 ATTCCCTCCTTGTC 11417 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | | ||| | ||| | |||| ||||||||||| |||||||||||||| ||| Sbjct 11094 CCTCCCCTGAGCCTGAGCACAAGATGCAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 11035 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||||| || || || | || | |||||||||||| || Sbjct 11034 AAGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 10975 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| || || || || | | ||| || |||| ||| | Sbjct 10974 ATCCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGACT 10915 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| || || || || ||||| ||||| || || ||||| Sbjct 10914 TCCAAAGTAATCGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 10868 >seq26443 Length=10536 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | || ||||| || | || | ||||||||||| ||||| |||||||| ||| Sbjct 9049 CCTCCCCTCAGCCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 9108 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | |||| |||||||| ||||| || | || | |||||||| ||| ||| Sbjct 9109 AAGGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGG 9168 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| || || || || | | ||| || || | |||| Sbjct 9169 ATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCACTGCTCTCCACC 9228 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | ||| || ||||| |||||||| Sbjct 9229 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAAGATTTGCAT 9275 >seq5564 Length=26244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/209 (70%), Gaps = 10/209 (5%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCA 18893 ||||| || |||||||||||||| || || || || | ||| |||||| |||| Sbjct 5548 GTGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGCAAGTGT----GCGTCCATCTTCCA 5493 Query 18894 GCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAA 18953 | || || || ||| | || || |||||||| || || | ||||||||||| | Sbjct 5492 GTTGCTTCCCTGCAAAGATTAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGA 5433 Query 18954 TTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTA 19012 |||| ||| || | | | | || || | || |||| || | ||| |||||||| Sbjct 5432 TTTTAGCTTTCACATTGTCAATCGTGTC-CGAGTTCTCCACCTCCAGGGTGATGGTTTTT 5374 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||| || |||||||| ||||| Sbjct 5373 CCTGTCAAAGTCTTCACAAAAATCTGCAT 5345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414328269027418