Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5564 82.4 5e-11 >seq5564 Length=26244 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| |||||||| ||||| || | | || |||| |||| ||| Sbjct 5547 TGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGCAAGTGTGCGTCCATCTTCCAGTTGC 5488 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || |||||||| || | || |||||||| | || | ||| ||||| ||| ||||| Sbjct 5487 TTCCCTGCAAAGATTAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTA 5428 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||| || | ||| || || | |||||| || | || || ||||| || || Sbjct 5427 GCTTTCACATTGTCAATCGTGTCCGAGTTCTCCACCTCCAGGGTGATGGTTTTTCCTGTC 5368 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 |||||||||||||| || ||||| Sbjct 5367 AAAGTCTTCACAAAAATCTGCAT 5345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354568338534756