Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq9952 86.0 5e-12 >seq9952 Length=36685 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || |||||||||| ||| || |||||||| || || ||||||||||| || Sbjct 3687 CCTCCTCTCAATCTCAACACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAATCAGCC 3746 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||| | || || || ||| | || |||||||| || || || Sbjct 3747 AGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGCTCCGGAGGG 3806 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| ||||| || || ||| || | ||| | | |||| | || Sbjct 3807 ATGCCTTCCTTGTCCTGTATCTTGGCTTTAACGTTGCCGATGGTATCGGAACTCTCAACC 3866 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || || |||||||| | ||| ||||| || || ||||| Sbjct 3867 TCGAGAGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 3913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419339711341557