Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq23362 120 3e-22 seq3328 105 6e-18 seq26443 104 2e-17 seq13422 95.1 1e-14 seq25669 91.5 1e-13 seq9952 89.7 4e-13 seq14506 87.8 2e-12 seq8451 87.8 2e-12 >seq23362 Length=32732 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| |||||||| || |||||||||||||||| ||| || | Sbjct 20218 CTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 20159 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||| ||||| ||| ||| | | |||||||||| || || ||||| | Sbjct 20158 GATCAGACGTTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 20099 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 20098 GTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCAC 20039 Query 48715 AAAAATCTGCATCGTG 48730 || |||||||||||| Sbjct 20038 GAAGATCTGCATCGTG 20023 >seq3328 Length=37150 Score = 105 bits (116), Expect = 6e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| || |||||||| ||||| || || ||| |||||||||||||||| ||| || | Sbjct 14117 TCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAA 14175 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| ||| ||| | | |||||||||| || || ||||| | Sbjct 14176 GATCAGCCTCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 14235 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 14236 GTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATTGTCTTACCCGTGAGGGTCTTCAC 14295 Query 48715 AAAAATCTGCATCGT 48729 || ||||||||||| Sbjct 14296 GAAGATCTGCATCGT 14310 >seq26443 Length=10536 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | || ||||| || | ||| || || |||||| |||||||||||||| || Sbjct 9048 ACCTCCCCTCAGCCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGC 9107 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| |||||||||||||| || | || || | |||||| ||| || Sbjct 9108 CAAGGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 9167 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| || || ||||| | | || ||||| || | |||| Sbjct 9168 GATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCG--ATGGTGTCACTGCTCTCC 9225 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| ||||| |||||||| || ||||| Sbjct 9226 ACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAAGATTTGCAT 9275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCTCCAGCTG 48582 || || ||| ||| || || |||||||| || |||| ||| || |||||||||||| Sbjct 8617 TGGAGGGTGGACTCATTCTGGATGTTGTAGTCCGCCAGA-GTCCTTCCGTCCTCCAGCTG 8675 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| | | || || | |||||| ||| || | | ||||||||| ||||| Sbjct 8676 CTTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGTATCCCTTCCTTGTCTTGGATTTT 8735 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | ||||| ||| | |||| ||| | || || || || ||||| Sbjct 8736 GGGCTTGACATTGTCAATGGTGTCGCTGCTCTCCACCTCCAAAGTGATTGTCTTTCCGGT 8795 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||| ||||||||| Sbjct 8796 CAGGGTCTTGACAAAGATCTGCATC 8820 >seq13422 Length=48529 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||||| | || || ||||| ||||||| ||| || | Sbjct 22779 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGGCCTCCCGCTGCTTCCCGGCGAA 22720 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| ||| || | | |||||||||| || || ||||| | Sbjct 22719 GATCAGCCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGACTTGACATT 22660 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | |||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 22659 GTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCAC 22600 Query 48715 AAAAATCTGCATCGT 48729 || ||||||||||| Sbjct 22599 GAAGATCTGCATCGT 22585 >seq25669 Length=30460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | ||| | |||| ||| || || ||||| || || |||||||| || Sbjct 8773 CCTCCGCGGAGCCTCAGTACTAGATGGAGAGTTGATTCCTTCTGGATATTGTAATCCGCT 8714 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | ||||| |||||||| || || |||| || |||||||||||| || Sbjct 8713 AGGGTACGGCCATCCTCGAGCTGCTTCCCCGCGAAAATCAATCGCTGCTGATCCGGAGGA 8654 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| || || ||||| | | || ||||||| | ||| | Sbjct 8653 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTATCGGAACTCTCAACC 8594 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || || || || || || || ||||| || || ||||||||| Sbjct 8593 TCGAGAGTAATCGTCTTCCCAGTCAGTGTTTTGACGAAGATCTGCATC 8546 >seq9952 Length=36685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| || ||||| | ||| || || ||||| || ||||||||||||||| Sbjct 3687 CCTCCTCTCAATCTCAACACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAATCAGCC 3746 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | || || |||||||| ||| | | || | | |||||| ||| || Sbjct 3747 AGAGTG-CGGCCATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGCTCCGGAGG 3805 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | |||||||||| || || |||| | | | | |||||||||| | ||| Sbjct 3806 GATGCCTTCCTTGTCCTGTATCTT-GGCTTTAACGTTGCCGATGGTATCGGAACTCTCAA 3864 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || || || |||||||| || || || || ||||||||| Sbjct 3865 CCTCGAGAGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATC 3914 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||||| |||| ||| || || |||||| || || ||||| || || Sbjct 3459 CCTCCACGGAGCCTTAGTACTAGATGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCT 3518 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | ||||| |||||||| || || |||| || |||||||||||| || Sbjct 3519 AGGGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAAATCAATCGCTGCTGATCCGGAGGA 3578 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | || |||||||||| || || ||||| | | || || || || | ||| Sbjct 3579 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATCGTGTCAGAGCTCTCGA 3636 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || |||||||| || || || || ||||||||| Sbjct 3637 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 3686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTGCTTACCGCCGT 48593 ||||||||||||||||||||| | ||| ||| | |||| ||||||||||| ||| || Sbjct 3266 CTCCTTTTGAATGTTGTAATCCG-CAAGCGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGA 3324 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | | |||||| ||| || | || ||||| ||| || || ||||| | Sbjct 3325 AGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTATCCTGGATCTTGGCCTTGACGT 3384 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || || ||||| | | ||| || | ||||| || || || || ||||| || Sbjct 3385 TGTCG--ATCGTATCAGAACTCTCGACTTCCAGAGTTATCGTCTTCCCCGTCAGAGTCTT 3442 Query 48712 CACAAAAATCTGCATC 48727 |||||| ||||||||| Sbjct 3443 CACAAAGATCTGCATC 3458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/246 (68%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| || || || || ||||| || |||||||||||||| Sbjct 3915 CCTCCTCTCAATCGCAGCACCAAGTGGAGAGTCGATTCCTTCTGGATGTTGTAATCAGCT 3974 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| |||||||| ||| || | || | | |||||| ||| || Sbjct 3975 AGAGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGG 4034 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| || || ||||| | | || ||||| || | ||| Sbjct 4035 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGAGCTCTCGA 4092 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCTTGAT 48737 ||||| || ||||| || ||||| || ||||| || || |||||||| || || ||| Sbjct 4093 CCTCGAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCATAGTTTC-AGAT 4151 Query 48738 CGAAGA 48743 || ||| Sbjct 4152 CGTAGA 4157 >seq14506 Length=85774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||| |||||| ||||||||||| |||| ||| || ||| | |||| Sbjct 52876 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-CAAGGGTGCGCCCATCCT 52934 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | |||| || | |||||| || || | | |||||| ||| Sbjct 52935 CTAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCCT 52994 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | ||||| || | ||| ||| | ||||| || | Sbjct 52995 GTATCTTAGCCTTCACATTATCAATGGTGTCAGAGCTTTCCACCTCAAGGGTTATTGTCT 53054 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||||||||||||||| ||||| |||||| Sbjct 53055 TTCCGGTGAGAGTTTTCACGAAAATTTGCATC 53086 >seq8451 Length=23797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || || || |||| ||||||||||| ||| || | Sbjct 13505 CTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAA 13446 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| || || | | |||||||||| || || ||||| | Sbjct 13445 GATCAGACGCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 13386 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | | ||| ||||| || ||||| | ||||| || |||||||| Sbjct 13385 GTCGATCGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTGCCCGGTTAGGGTTTTCAC 13326 Query 48715 AAAAATCTGCATCGTG 48730 || |||||||||||| Sbjct 13325 GAAGATCTGCATCGTG 13310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421002729850397