Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq239 111 8e-20
seq9708 105 3e-18
seq23109 104 1e-17
seq17269 102 4e-17
seq1990 102 4e-17
seq14445 98.7 5e-16
seq9393 98.7 5e-16
seq8389 98.7 5e-16
seq28700 96.9 2e-15
seq20398 96.9 2e-15
seq17346 96.9 2e-15
seq24247 95.1 6e-15
seq22402 95.1 6e-15
seq10920 95.1 6e-15
seq28266 93.3 2e-14
seq22987 93.3 2e-14
seq29472 91.5 8e-14
seq28893 91.5 8e-14
seq24536 91.5 8e-14
seq22784 91.5 8e-14
seq22220 91.5 8e-14
seq19682 91.5 8e-14
seq10220 91.5 8e-14
seq8715 91.5 8e-14
seq8421 91.5 8e-14
seq6883 91.5 8e-14
seq16632 89.7 3e-13
seq2530 89.7 3e-13
>seq239
Length=20712
Score = 111 bits (122), Expect = 8e-20
Identities = 86/103 (83%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||||||| |||||| || |||||||| | | |||||||| |||||||||||||||
Sbjct 2953 GAATTAAGAAAAAAGGTAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATT 3012
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGAT 11538
||||||||||||| ||||||||||||||| |||| | || |||
Sbjct 3013 AGCACGACGCTCTAACCAACTGAGCTAATAGGCCATTGATGAT 3055
>seq9708
Length=48662
Score = 105 bits (116), Expect = 3e-18
Identities = 75/87 (86%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 38673 AAAAAGCAATTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 38732
Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531
|||| |||| |||||||||| ||||||
Sbjct 38733 CTCTAACCAGCTGAGCTAATAGGCCGT 38759
>seq23109
Length=19275
Score = 104 bits (114), Expect = 1e-17
Identities = 79/94 (84%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| |||||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 3659 AAAAGTAAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 3600
Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539
||| |||| |||||||||| |||||| | ||||
Sbjct 3599 TCTAACCAGCTGAGCTAATAGGCCGTTGGTGATT 3566
>seq17269
Length=45834
Score = 102 bits (112), Expect = 4e-17
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||| || ||| ||||||||| | | |||||||| |||||| |||||||||||||
Sbjct 17646 AAAAAACAAACAATTTGGCCCATACAGGTCTCGAACCTGTGACCTTGGCGTTATTAGCAC 17587
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||| |||||||||||||||||||||
Sbjct 17586 CACGCTCTAACCAACTGAGCTAATGGGCCG 17557
>seq1990
Length=41836
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | | |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 10395 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAAC 10454
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 10455 CAGCTGAGCTAATAGGCC 10472
>seq14445
Length=57742
Score = 98.7 bits (108), Expect = 5e-16
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|||||||||||| | | |||||||| |||||||||||||||||||||||||||| ||
Sbjct 53140 AAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 53199
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 53200 CAGCTGAGCTAATAGGCC 53217
>seq9393
Length=17916
Score = 98.7 bits (108), Expect = 5e-16
Identities = 73/85 (86%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| |||| ||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 10928 AAAAATTAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 10986
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||||| ||||
Sbjct 10987 CTCTAACCAGCTGAGCTAATAGGCC 11011
>seq8389
Length=25775
Score = 98.7 bits (108), Expect = 5e-16
Identities = 79/94 (84%), Gaps = 3/94 (3%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||||| | ||||| || | | |||||||| ||||||||||||||||||||
Sbjct 11288 AAGAAAAAATCGA--TGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCAC 11231
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534
|||||||| ||||||||||||||| |||| ||||
Sbjct 11230 GACGCTCTAACCAACTGAGCTAATAGGCC-TCGA 11198
>seq28700
Length=15692
Score = 96.9 bits (106), Expect = 2e-15
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || | |||||||| | | |||||||| |||||||||||||||||||| ||
Sbjct 8751 AAAAAAACATAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACAAC 8692
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTG 11540
||||| |||| |||||||||| |||| | || | |||
Sbjct 8691 GCTCTAACCAGCTGAGCTAATAGGCCATTGATGTTTG 8655
>seq20398
Length=45672
Score = 96.9 bits (106), Expect = 2e-15
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||| | | |||||||| ||| |||||||| |||||| |||||||||||||
Sbjct 39849 AAAAAAAAACCTA--TGGCCCATACAAGTCTCGAACCTGTGACCTTGGCGTTATTAGCAC 39906
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 39907 CACGCTCTAACCAACTGAGCTAATGGGCC 39935
>seq17346
Length=54650
Score = 96.9 bits (106), Expect = 2e-15
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||||| | ||||||||| | | |||||||| |||||||||||||||||||| |
Sbjct 38725 TAAAAAATGATTTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACAA 38666
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| |||| |||||||||| ||||
Sbjct 38665 CGCTCTAACCAGCTGAGCTAATAGGCC 38639
>seq24247
Length=79710
Score = 95.1 bits (104), Expect = 6e-15
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||||||| | | |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 68488 ATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 68547
Query 11514 ACTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 68548 GCTGAGCTAATAGGCC 68563
>seq22402
Length=9902
Score = 95.1 bits (104), Expect = 6e-15
Identities = 71/83 (86%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506
||| ||||| ||||||| | | |||||||| ||||||||||||||||||||||||||
Sbjct 3507 AAAACAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCT 3449
Query 11507 CTRACCAACTGAGCTAATGGGCC 11529
|| |||| |||||||||| ||||
Sbjct 3448 CTAACCAGCTGAGCTAATAGGCC 3426
>seq10920
Length=11834
Score = 95.1 bits (104), Expect = 6e-15
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||||||| | | |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 3269 ATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 3328
Query 11514 ACTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 3329 GCTGAGCTAATAGGCC 3344
>seq28266
Length=30724
Score = 93.3 bits (102), Expect = 2e-14
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| |||||||| | | |||||||| |||||||||||||||||||||||||||| ||
Sbjct 10597 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 10538
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 10537 CAGCTGAGCTAATAGGCC 10520
>seq22987
Length=19484
Score = 93.3 bits (102), Expect = 2e-14
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| |||||||| | | |||||||| |||||||||||||||||||||||||||| |||
Sbjct 12774 AAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 12715
Query 11513 AACTGAGCTAATGGGCC-GTCG 11533
| |||||||||| |||| ||||
Sbjct 12714 AGCTGAGCTAATAGGCCAGTCG 12693
>seq29472
Length=14695
Score = 91.5 bits (100), Expect = 8e-14
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| |||| |
Sbjct 543 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 484
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 483 TGAGCTAATAGGCC 470
>seq28893
Length=17725
Score = 91.5 bits (100), Expect = 8e-14
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| ||| || ||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 1370 AAAAACAATGTGACCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 1429
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||| |||||||||| ||||
Sbjct 1430 TCTAACCAGCTGAGCTAATAGGCC 1453
>seq24536
Length=17663
Score = 91.5 bits (100), Expect = 8e-14
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| |||| |
Sbjct 4303 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4244
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 4243 TGAGCTAATAGGCC 4230
>seq22784
Length=22260
Score = 91.5 bits (100), Expect = 8e-14
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| ||| || ||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 21174 AAAAACAATGTGACCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 21115
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||| |||||||||| ||||
Sbjct 21114 TCTAACCAGCTGAGCTAATAGGCC 21091
>seq22220
Length=11010
Score = 91.5 bits (100), Expect = 8e-14
Identities = 73/88 (83%), Gaps = 3/88 (3%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501
|||||| || || ||||||| | | |||||||| |||||| |||||||||||||
Sbjct 2154 AAAAATTAAGTTTCTGGCCCATACAGGTCTCGAACCTATGACCTTGGCGTTATTAGCACC 2095
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 2094 ACGCTCTAACCAACTGAGCTAATGGGCC 2067
>seq19682
Length=22642
Score = 91.5 bits (100), Expect = 8e-14
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|||| |||||||| | | |||||||| |||||||||||||||||||||||||||| |
Sbjct 11999 AAATATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 12058
Query 11511 CCAACTGAGCTAATGGGCC 11529
||| |||||||||| ||||
Sbjct 12059 CCAGCTGAGCTAATAGGCC 12077
>seq10220
Length=25770
Score = 91.5 bits (100), Expect = 8e-14
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| |||| |
Sbjct 5857 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 5798
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 5797 TGAGCTAATAGGCC 5784
>seq8715
Length=73009
Score = 91.5 bits (100), Expect = 8e-14
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| |||| |
Sbjct 12375 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 12316
Query 11516 TGAGCTAATGGGCCGTCGACGA 11537
||||||||| |||| ||| ||
Sbjct 12315 TGAGCTAATAGGCCAACGATGA 12294
Score = 89.7 bits (98), Expect = 3e-13
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || ||||||||| ||| || ||||| ||||||||||||||||||||||||
Sbjct 15750 AAAAA--AAGTTGGCCCATACAAGTCTCAAACCTGTGACCTTCGCGTTATTAGCACGACG 15693
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| ||||||||| ||||
Sbjct 15692 CTCTAACCAGTTGAGCTAATAGGCC 15668
>seq8421
Length=9921
Score = 91.5 bits (100), Expect = 8e-14
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||||||||||||||||||||||||| |||| |
Sbjct 7344 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 7285
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 7284 TGAGCTAATAGGCC 7271
>seq6883
Length=8796
Score = 91.5 bits (100), Expect = 8e-14
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| | | |||||||| |||||| ||||||||||||||||||||| |||| |
Sbjct 2186 TGGCCCATACAGGTCTCGAACCTGTGACCTTGGCGTTATTAGCACGACGCTCTAACCAGC 2245
Query 11516 TGAGCTAATGGGCCGTCGA 11534
||||||||| |||||| ||
Sbjct 2246 TGAGCTAATAGGCCGTTGA 2264
>seq16632
Length=32512
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| |||||||| | | |||||||| |||||||||||||||||| ||||||||| ||
Sbjct 1745 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCGCGACGCTCTAAC 1686
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 1685 CAGCTGAGCTAATAGGCC 1668
>seq2530
Length=9618
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| ||||||||| | | |||||||| |||||||||||||||||||| ||||||| ||
Sbjct 2127 AATTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACAACGCTCTAAC 2186
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 2187 CAGCTGAGCTAATAGGCC 2204
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261336962439172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |