Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq239 111 8e-20 seq9708 105 3e-18 seq23109 104 1e-17 seq17269 102 4e-17 seq1990 102 4e-17 seq14445 98.7 5e-16 seq9393 98.7 5e-16 seq8389 98.7 5e-16 seq28700 96.9 2e-15 seq20398 96.9 2e-15 seq17346 96.9 2e-15 seq24247 95.1 6e-15 seq22402 95.1 6e-15 seq10920 95.1 6e-15 seq28266 93.3 2e-14 seq22987 93.3 2e-14 seq29472 91.5 8e-14 seq28893 91.5 8e-14 seq24536 91.5 8e-14 seq22784 91.5 8e-14 seq22220 91.5 8e-14 seq19682 91.5 8e-14 seq10220 91.5 8e-14 seq8715 91.5 8e-14 seq8421 91.5 8e-14 seq6883 91.5 8e-14 seq16632 89.7 3e-13 seq2530 89.7 3e-13 >seq239 Length=20712 Score = 111 bits (122), Expect = 8e-20 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||||||| |||||| || |||||||| | | |||||||| ||||||||||||||| Sbjct 2953 GAATTAAGAAAAAAGGTAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATT 3012 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGAT 11538 ||||||||||||| ||||||||||||||| |||| | || ||| Sbjct 3013 AGCACGACGCTCTAACCAACTGAGCTAATAGGCCATTGATGAT 3055 >seq9708 Length=48662 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 38673 AAAAAGCAATTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 38732 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| |||| |||||||||| |||||| Sbjct 38733 CTCTAACCAGCTGAGCTAATAGGCCGT 38759 >seq23109 Length=19275 Score = 104 bits (114), Expect = 1e-17 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 3659 AAAAGTAAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 3600 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 ||| |||| |||||||||| |||||| | |||| Sbjct 3599 TCTAACCAGCTGAGCTAATAGGCCGTTGGTGATT 3566 >seq17269 Length=45834 Score = 102 bits (112), Expect = 4e-17 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||| || ||| ||||||||| | | |||||||| |||||| ||||||||||||| Sbjct 17646 AAAAAACAAACAATTTGGCCCATACAGGTCTCGAACCTGTGACCTTGGCGTTATTAGCAC 17587 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||||||||| Sbjct 17586 CACGCTCTAACCAACTGAGCTAATGGGCCG 17557 >seq1990 Length=41836 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| |||||||| |||||||||||||||||||| || Sbjct 10395 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAAC 10454 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 10455 CAGCTGAGCTAATAGGCC 10472 >seq14445 Length=57742 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 53140 AAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 53199 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 53200 CAGCTGAGCTAATAGGCC 53217 >seq9393 Length=17916 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||| ||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 10928 AAAAATTAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 10986 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 10987 CTCTAACCAGCTGAGCTAATAGGCC 11011 >seq8389 Length=25775 Score = 98.7 bits (108), Expect = 5e-16 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||||| | ||||| || | | |||||||| |||||||||||||||||||| Sbjct 11288 AAGAAAAAATCGA--TGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCAC 11231 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||| ||||||||||||||| |||| |||| Sbjct 11230 GACGCTCTAACCAACTGAGCTAATAGGCC-TCGA 11198 >seq28700 Length=15692 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || | |||||||| | | |||||||| |||||||||||||||||||| || Sbjct 8751 AAAAAAACATAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACAAC 8692 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTG 11540 ||||| |||| |||||||||| |||| | || | ||| Sbjct 8691 GCTCTAACCAGCTGAGCTAATAGGCCATTGATGTTTG 8655 >seq20398 Length=45672 Score = 96.9 bits (106), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | | |||||||| ||| |||||||| |||||| ||||||||||||| Sbjct 39849 AAAAAAAAACCTA--TGGCCCATACAAGTCTCGAACCTGTGACCTTGGCGTTATTAGCAC 39906 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 39907 CACGCTCTAACCAACTGAGCTAATGGGCC 39935 >seq17346 Length=54650 Score = 96.9 bits (106), Expect = 2e-15 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | |||||||| |||||||||||||||||||| | Sbjct 38725 TAAAAAATGATTTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACAA 38666 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 38665 CGCTCTAACCAGCTGAGCTAATAGGCC 38639 >seq24247 Length=79710 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||| | | |||||||| |||||||||||||||||||||||||||| |||| Sbjct 68488 ATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 68547 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 68548 GCTGAGCTAATAGGCC 68563 >seq22402 Length=9902 Score = 95.1 bits (104), Expect = 6e-15 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||||| ||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 3507 AAAACAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCT 3449 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||| |||||||||| |||| Sbjct 3448 CTAACCAGCTGAGCTAATAGGCC 3426 >seq10920 Length=11834 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||| | | |||||||| |||||||||||||||||||||||||||| |||| Sbjct 3269 ATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCA 3328 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 3329 GCTGAGCTAATAGGCC 3344 >seq28266 Length=30724 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 10597 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 10538 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 10537 CAGCTGAGCTAATAGGCC 10520 >seq22987 Length=19484 Score = 93.3 bits (102), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||| | | |||||||| |||||||||||||||||||||||||||| ||| Sbjct 12774 AAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACC 12715 Query 11513 AACTGAGCTAATGGGCC-GTCG 11533 | |||||||||| |||| |||| Sbjct 12714 AGCTGAGCTAATAGGCCAGTCG 12693 >seq29472 Length=14695 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 543 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 484 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 483 TGAGCTAATAGGCC 470 >seq28893 Length=17725 Score = 91.5 bits (100), Expect = 8e-14 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| || ||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1370 AAAAACAATGTGACCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 1429 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 1430 TCTAACCAGCTGAGCTAATAGGCC 1453 >seq24536 Length=17663 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 4303 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4244 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 4243 TGAGCTAATAGGCC 4230 >seq22784 Length=22260 Score = 91.5 bits (100), Expect = 8e-14 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| || ||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 21174 AAAAACAATGTGACCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGC 21115 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 21114 TCTAACCAGCTGAGCTAATAGGCC 21091 >seq22220 Length=11010 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/88 (83%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| || || ||||||| | | |||||||| |||||| ||||||||||||| Sbjct 2154 AAAAATTAAGTTTCTGGCCCATACAGGTCTCGAACCTATGACCTTGGCGTTATTAGCACC 2095 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 2094 ACGCTCTAACCAACTGAGCTAATGGGCC 2067 >seq19682 Length=22642 Score = 91.5 bits (100), Expect = 8e-14 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||||||| | | |||||||| |||||||||||||||||||||||||||| | Sbjct 11999 AAATATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 12058 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| |||||||||| |||| Sbjct 12059 CCAGCTGAGCTAATAGGCC 12077 >seq10220 Length=25770 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 5857 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 5798 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5797 TGAGCTAATAGGCC 5784 >seq8715 Length=73009 Score = 91.5 bits (100), Expect = 8e-14 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 12375 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 12316 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 ||||||||| |||| ||| || Sbjct 12315 TGAGCTAATAGGCCAACGATGA 12294 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||||||| ||| || ||||| |||||||||||||||||||||||| Sbjct 15750 AAAAA--AAGTTGGCCCATACAAGTCTCAAACCTGTGACCTTCGCGTTATTAGCACGACG 15693 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||| |||| Sbjct 15692 CTCTAACCAGTTGAGCTAATAGGCC 15668 >seq8421 Length=9921 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 7344 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 7285 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 7284 TGAGCTAATAGGCC 7271 >seq6883 Length=8796 Score = 91.5 bits (100), Expect = 8e-14 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||| ||||||||||||||||||||| |||| | Sbjct 2186 TGGCCCATACAGGTCTCGAACCTGTGACCTTGGCGTTATTAGCACGACGCTCTAACCAGC 2245 Query 11516 TGAGCTAATGGGCCGTCGA 11534 ||||||||| |||||| || Sbjct 2246 TGAGCTAATAGGCCGTTGA 2264 >seq16632 Length=32512 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||| ||||||||| || Sbjct 1745 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCGCGACGCTCTAAC 1686 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 1685 CAGCTGAGCTAATAGGCC 1668 >seq2530 Length=9618 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||| | | |||||||| |||||||||||||||||||| ||||||| || Sbjct 2127 AATTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACAACGCTCTAAC 2186 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 2187 CAGCTGAGCTAATAGGCC 2204 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261336962439172