Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10856 141 1e-29 seq20600 138 2e-28 seq20182 138 2e-28 seq8044 136 6e-28 seq12617 134 2e-27 seq10914 132 8e-27 seq5099 123 4e-24 seq22620 122 1e-23 seq2825 118 2e-22 seq18188 114 2e-21 seq26825 113 7e-21 seq12516 107 3e-19 seq12515 107 3e-19 >seq10856 Length=22501 Score = 141 bits (156), Expect = 1e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| |||||||| ||||| || ||| | | || ||||| | ||||| ||| Sbjct 13061 GATAACATCCAGGGAATCACTAAGCCGGCAATCAGAAGGCTCGCTCGCAGAGGTGGCGTC 13120 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| || || | | | |||||||||||||||||| || Sbjct 13121 AAGCGTATCAGCGGGCTGATCTACGAGGAAACCAGGGGAGTTTTGAAGATCTTCCTCGAG 13180 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| || ||| ||||||||||||| | |||||||| ||| || Sbjct 13181 AACGTGATTCGTGATGCTGTCACCTACACCGAGCACGCTAGGAGGAAGACTGTGACCGCC 13240 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | ||||| || | || | || || |||| | || || ||||| Sbjct 13241 ATGGACGTTGTCTACGCTCTCAAGAGGCAGGGTCGTACTCTATACGGCTTTGG 13293 >seq20600 Length=50480 Score = 138 bits (152), Expect = 2e-28 Identities = 176/241 (73%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| |||||||||||||| || ||||||||||| || ||||| | || || || | | Sbjct 4649 TCTTGCGAGATAACATCCAGGGCATCACCAAGCCCGCCATCCGAAGGCTCGCCCGCAGAG 4708 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 |||| ||||| ||| || ||| | |||| || || | | | ||| | ||||||| Sbjct 4709 GTGGGGTCAAACGTATCAGTGGCCTCATCTACGAGGAAACCAGAGGCGTTCTCAAGATCT 4768 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 ||||| ||| ||| || | |||||| || ||| || ||||||||| | ||||| | Sbjct 4769 TCCTCGAGAACGTCATTCGCGATGCTGTCACCTACACTGAGCACGCTCGCAGGAAGACCG 4828 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 ||||| | |||||| ||||||| || ||||| | || ||||||| | || ||||| | Sbjct 4829 TCACCGCAATGGATGTCGTCTACGCCTTGAAGAGGCAGGGCCGTACCCTCTACGGTTTCG 4888 Query 16692 G 16692 | Sbjct 4889 G 4889 >seq20182 Length=65172 Score = 138 bits (152), Expect = 2e-28 Identities = 176/241 (73%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| |||||||||||||| || ||||||||||| || ||||| | || || || | | Sbjct 47251 TCTTGCGAGATAACATCCAGGGCATCACCAAGCCCGCCATCCGAAGGCTCGCCCGCAGAG 47310 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 |||| ||||| ||| || ||| | |||| || || | | | || | ||||||| Sbjct 47311 GTGGGGTCAAACGTATCAGTGGCCTCATCTACGAGGAAACCAGAGGCGTCCTCAAGATCT 47370 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 ||||| ||| ||| || | ||||| || ||| |||||||| ||| | ||||| | Sbjct 47371 TCCTCGAGAACGTGATTCGCGATGCCGTCACCTACACCGAGCATGCTCGCAGGAAGACCG 47430 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 ||||| |||||||| ||||||| || ||||| | |||||||||| | || ||||| | Sbjct 47431 TCACCGCCATGGATGTCGTCTACGCTTTGAAGAGGCAAGGCCGTACCCTCTACGGTTTCG 47490 Query 16692 G 16692 | Sbjct 47491 G 47491 >seq8044 Length=70462 Score = 136 bits (150), Expect = 6e-28 Identities = 177/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| || || || ||||| ||||| | || Sbjct 11478 CTCCGAGACAACATCCAGGGGATCACCAAGCCTGCGATTCGCCGTCTAGCTCGCAGGGGA 11537 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || |||| || |||| ||||| |||| | ||||||||| Sbjct 11538 GGAGTGAAGAGAATCAGCGGGCTGATCTACGAGGAGACTCGTGGTGTTCTCAAGATCTTC 11597 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| ||| || | ||| ||||||||||| | | |||||||| Sbjct 11598 TTGGAGAATGTCATCCGTGACGCCGTGACCTACACCGAGCACGCCAGGAGGAAGACTGTG 11657 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||| | || ||||| |||| | || ||||||| |||| || || || Sbjct 11658 ACCGCGATGGATGTGGTTTATGCTCTGAAGAGGCAGGGCCGTACTCTTTACGGGTTCGGC 11717 Query 16694 AGTTA 16698 |||| Sbjct 11718 GGTTA 11722 >seq12617 Length=25226 Score = 134 bits (148), Expect = 2e-27 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||| ||||| ||||| |||||||||||||| | || || | Sbjct 16717 GAGACAACATCCAGGGAATCACAAAGCCTGCTATTCGTCGTCTGGCTCGCAGAGGAGGCG 16658 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| ||| | || | ||||||||| | Sbjct 16657 TCAAGCGTATCAGTGGGCTGATCTACGAGGAGACTCGCGGCGTGCTCAAGATCTTCTTGG 16598 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| || ||| | ||| ||||||||||| | | ||||| || || Sbjct 16597 AGAATGTCATCAGGGACGCTGTTACCTACACCGAGCACGCCAGGAGGAAGACGGTGACTG 16538 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 | |||||| |||||||||| |||| | ||||| Sbjct 16537 CTATGGATGTCGTCTATGCTCTGAAGAGGCAAGG 16504 Score = 131 bits (144), Expect = 3e-26 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| |||||||||||||| ||||| |||||||||||||| | || || ||| Sbjct 13221 GATAACATCCAGGGAATCACCAAGCCTGCTATTCGTCGTCTGGCTCGCAGAGGAGGCGTC 13162 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| || |||| || |||| ||| | || | ||||||||| | || Sbjct 13161 AAGCGTATCAGTGGGCTGATCTACGAGGAGACTCGCGGCGTGCTCAAGATCTTCTTGGAG 13102 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || ||| || || || ||| || |||||||| | | ||||| || || | Sbjct 13101 AATGTCATCAGGGACGCCGTCACCTACACTGAGCACGCCAGGAGGAAGACAGTGACTGCT 13042 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| |||||||||| |||| | ||||| Sbjct 13041 ATGGACGTCGTCTATGCTCTGAAGAGGCAAGG 13010 >seq10914 Length=17396 Score = 132 bits (146), Expect = 8e-27 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| |||||||| ||||| || ||| | | || ||||| | ||||| ||| Sbjct 14621 GATAACATCCAGGGAATCACTAAGCCGGCAATCAGAAGGCTCGCTCGCAGAGGTGGCGTC 14562 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| || || | | | |||||||||||||||||| || Sbjct 14561 AAGCGTATCAGCGGGCTGATCTACGAGGAAACCAGGGGAGTTTTGAAGATCTTCCTCGAG 14502 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | ||| || |||||||| | | |||||||| ||| || Sbjct 14501 AACGTCATTCGTGATGCTGTGACCTACACTGAGCACGCAAGGAGGAAGACTGTTACCGCC 14442 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | ||||| || | || | || ||||||| | || || ||||| Sbjct 14441 ATGGACGTTGTCTACGCTCTCAAGAGGCAGGGCCGTACTCTCTACGGCTTTGG 14389 >seq5099 Length=56982 Score = 123 bits (136), Expect = 4e-24 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || || ||||| ||||| || ||||| ||||| ||||||||||| Sbjct 47860 CTCCGCGATAACATTCAGGGCATCACTAAGCCGGCCATCCGCCGTCTAGCTCGTCGTGGC 47801 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || | |||| || || | | | |||| | ||||| ||| Sbjct 47800 GGTGTGAAGCGTATTAGCGGCCTCATCTACGAGGAAACCAGAGGTGTTCTCAAGATATTC 47741 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || || ||| |||||||||||| || ||||| ||| Sbjct 47740 TTGGAGAACGTGATCCGAGACGCCGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTC 47681 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| |||||||||| | || | |||||| | | | ||||| || || Sbjct 47680 ACAGCCATGGACGTCGTCTATGCTCTCAAGAGGCAAGGCAGGACATTGTATGGATTCGGC 47621 Query 16694 AGTTAA 16699 ||||| Sbjct 47620 GGTTAA 47615 >seq22620 Length=19293 Score = 122 bits (134), Expect = 1e-23 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| || || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 6764 CTTCGCGATAACATTCAGGGCATCACTAAGCCGGCCATACGACGTCTAGCTCGCCGTGGC 6823 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || | |||| || || | | | |||| | |||||||| Sbjct 6824 GGTGTGAAGCGTATTAGCGGCCTCATCTACGAGGAAACCAGAGGTGTTCTCAAGATCTTT 6883 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| ||| || || ||| |||||||||||| || ||||| ||| Sbjct 6884 TTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTC 6943 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| |||||||||| | || | |||||| | | | |||||||| || Sbjct 6944 ACAGCTATGGACGTCGTCTATGCTCTCAAGAGGCAAGGCAGGACACTGTATGGTTTCGGT 7003 Query 16694 AGTTA 16698 |||| Sbjct 7004 GGTTA 7008 >seq2825 Length=32849 Score = 118 bits (130), Expect = 2e-22 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| || || || ||||||||||| | || Sbjct 8193 CTCCGAGACAACATCCAGGGGATCACCAAGCCTGCGATTCGCCGTCTGGCTCGCAGGGGA 8252 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || || |||| || || | ||| | ||| | ||||||||| Sbjct 8253 GGAGTGAAGAGGATCAGCGGGCTGATCTACGAGGAAACTCGCGGCGTTCTCAAGATCTTC 8312 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| ||| || | ||| ||||||||||| | | |||||||| Sbjct 8313 TTGGAGAATGTCATCCGTGACGCCGTGACCTACACCGAGCACGCCAGGAGGAAGACTGTG 8372 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||| | |||||| | || ||||| |||| | || || |||| Sbjct 8373 ACCGCGATGGATGTGGTTTATGCTCTGAAGAGGCAGGGACGTA 8415 >seq18188 Length=56561 Score = 114 bits (126), Expect = 2e-21 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||| |||||||| ||||||||||||||||| ||||| || || ||||| | || Sbjct 49490 TCTCCGAGACAACATCCAGGGAATCACCAAGCCAGCCATCCGCCGGCTAGCTCGCAGAGG 49549 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || |||||| | | ||| | |||| || |||| ||| | ||| | || ||||| Sbjct 49550 AGGCGTCAAGAGGATTAGCGGACTCATCTACGAGGAGACTCGCGGCGTTCTCAAAATCTT 49609 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || ||| || ||| | ||| || |||||||| | | ||||| || Sbjct 49610 CTTGGAGAATGTCATCAGAGACGCTGTTACCTACACTGAGCACGCCAGGAGGAAGACCGT 49669 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| ||||||| || |||| | || || | | |||| ||||| || Sbjct 49670 CACTGCCATGGATGTCGTCTACGCTCTGAAGAGGCAGGGAAGGACTCTTTACGGTTTCGG 49729 Query 16693 AAGTTA 16698 |||| Sbjct 49730 TGGTTA 49735 >seq26825 Length=16596 Score = 113 bits (124), Expect = 7e-21 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||| | || Sbjct 5222 TCTCCGAGACAACATCCAAGGGATCACCAAGCCTGCCATCCGCCGTCTAGCTCGTAGAGG 5281 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || |||||| | | ||| | |||| || |||| || | ||| | |||||||| Sbjct 5282 AGGCGTCAAGAGGATAAGCGGACTCATCTACGAGGAGACCCGCGGCGTTCTCAAGATCTT 5341 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| ||| ||| || || | ||| ||||||||||| | | ||||| || Sbjct 5342 TTTGGAGAACGTCATCAGAGACGCCGTTACCTACACCGAGCACGCCAGGAGGAAGACCGT 5401 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAA 16662 || |||||||| ||||||| || |||| Sbjct 5402 TACTGCCATGGATGTCGTCTACGCTCTGAA 5431 >seq12516 Length=12539 Score = 107 bits (118), Expect = 3e-19 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 |||||||| |||||||| || ||||| || |||||| ||||||| || || || || ||| Sbjct 2771 AACATCCAGGGAATCACAAATCCAGCCATTCGTCGTTTGGCTCGCCGAGGAGGCGTGAAG 2712 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 ||| || |||| | |||| || |||| ||| | ||| | ||||||||| | ||| Sbjct 2711 CGTATCAGTGGACTCATCTACGAGGAGACTCGCGGGGTTCTCAAGATCTTCTTGGAGAAT 2652 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 | ||| || || | ||| ||||||||||| | | | ||| || || | ||| Sbjct 2651 TTCATCAGGGACGCCGCCACCTACACCGAGCACGCCAGGAGGACGACGGTGACTGCTATG 2592 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| | ||||||| ||||| | ||||| Sbjct 2591 GATGTTGTCTATGGTTTGAAGAGGCAAGG 2563 >seq12515 Length=3812 Score = 107 bits (118), Expect = 3e-19 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| ||||| || ||||||||||| |||||| ||||||| | || || || Sbjct 2884 GATAACATCCAGGGAATTACAAAGCCAGCTATTCGTCGTTTGGCTCGCAGAGGAGGCGTG 2825 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| || |||| || |||| || | || | ||||||||| | || Sbjct 2824 AAGCGTATCAGTGGTCTGATCTACGAGGAGACCCGCGGAGTGCTCAAGATCTTCTTGGAG 2765 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || ||| ||||| | ||| || |||||||| | | ||||| || || | Sbjct 2764 AATGTCATCAGGGATGCCGTTACCTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCT 2705 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||| || || | ||||| Sbjct 2704 ATGGATGCCGTCTTTGCTTTTAAGAGGCAAGG 2673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79030950284121