Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq10156 304 2e-77
seq6213 300 3e-76
seq21559 188 1e-42
seq14731 183 5e-41
seq1192 149 1e-30
>seq10156
Length=9543
Score = 304 bits (336), Expect = 2e-77
Identities = 597/877 (68%), Gaps = 7/877 (1%)
Strand=Plus/Plus
Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729
|||| ||||| ||| | ||| | || ||||| | | || ||||||| | ||| |
Sbjct 541 TAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTGGAT 600
Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789
| | | || || ||||| || || | |||||| || ||| |||| || || |
Sbjct 601 CTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTATAG 660
Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849
|||| ||||| || || || ||||||||| || || ||||||| ||| | || ||||| |
Sbjct 661 GTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCG 720
Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909
|||||| || | | | | ||||| | | || | | |||||||| |
Sbjct 721 GTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTG 780
Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969
||||||||||| | | || | ||||||| |||||||| | |||| ||||||||||
Sbjct 781 AGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCAC 840
Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029
|| | |||| ||| | |||| ||| | | |||||| | ||||| || || ||
Sbjct 841 CTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTA 900
Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089
| |||||||||||||| || || || |||||||| ||| | ||||||| || | |
Sbjct 901 ATGGTATGCCTTTAGGAATTCTCGGTACTTTCAACTTTATGATTCTATTCCATGCTTAGC 960
Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTG--CAGGTATGTTCGGTGGAGC 212147
| |||||||||||||||||||| || ||| || || | | ||| ||| |||| |
Sbjct 961 ACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTA--TTCAGTGGCTC 1018
Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTT-ATCCGTGAAACCACTG 212206
||||| ||||||||| ||||| |||| || | || || || | |||||||| |
Sbjct 1019 CTTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTTTAGTTTGATAAGAGAAACCACAG 1077
Query 212207 GTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCG 212266
|| || || | | |||| ||||| |||| ||||| || || || ||
Sbjct 1078 AAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTA 1137
Query 212267 TTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCA 212326
| ||||| ||||| || || || | | ||||| | ||||| |||||||||
Sbjct 1138 TAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTC 1197
Query 212327 GAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGG 212386
| |||||| |||||| | ||| | |||||||| | || | ||| | | || |
Sbjct 1198 GTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTTTAA 1256
Query 212387 GTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATG 212446
|||| |||||||||| ||||||||||| |||||||||||||| |||| || ||||||
Sbjct 1257 GTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGATA 1316
Query 212447 CATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGG 212506
|||| | || ||||||| |||| || |||| | | ||| |||||||||
Sbjct 1317 GTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATGG 1376
Query 212507 AAGTTATGCACGAAAGAAATGCACACAACTTCCCACT 212543
| |||||||| ||| ||||| || || ||||| ||
Sbjct 1377 AGGTTATGCATGAACATAATGCTCATAATTTCCCTCT 1413
>seq6213
Length=1415
Score = 300 bits (332), Expect = 3e-76
Identities = 576/852 (68%), Gaps = 49/852 (6%)
Strand=Plus/Plus
Query 211744 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTAT 211803
|| || || || |||||||| || |||| |||| | || || |||| ||||| |
Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355
Query 211804 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTG 211863
|| || |||||||||||| | ||||||| ||| | || |||||||||||||| || |
Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415
Query 211864 GTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCA 211923
| | | ||||| | | || | | |||||||| | |||||||||||
Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475
Query 211924 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCT 211983
| || | |||||||||||||||| | |||||| |||||||| || || || | |
Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535
Query 211984 TTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGG------------TTCAT--TCT--- 212026
| ||||| ||| | || |||||| |||| ||| ||| | |||
Sbjct 536 ATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCTTGATCTACC 595
Query 212027 --------CAG------------ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTT 212066
||| | ||||||| |||||| || || || || ||||||||
Sbjct 596 CAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAACTT 655
Query 212067 CATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGT 212126
||| |||||||||||| || || |||||||||||||||||||| || ||| ||| ||
Sbjct 656 TATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGT 715
Query 212127 TGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTC 212186
|| | | ||||| || | ||||| || |||||| |||| ||||| || | ||
Sbjct 716 AGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTT-TCTTGGTAACTTTTA 774
Query 212187 ACTT-ATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAG 212245
|| || | |||||||| | || || || | ||||| ||||| |||
Sbjct 775 GTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTAAG 834
Query 212246 AAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGT 212305
| ||||| | ||||| || | ||||| ||||| || || || || | ||||| |
Sbjct 835 AGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTCAT 894
Query 212306 ATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCT 212365
||| ||||||||| | ||||||| |||||| | || |||||||| || |
Sbjct 895 ATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCCTGTGATAT 954
Query 212366 GTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACT 212425
|| | ||||| || ||| | ||||| |||| ||||| | ||||||||| |||||||
Sbjct 955 GTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAACT 1014
Query 212426 TCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTG-----TTCCTACTTGGGGTGATGT 212480
|||| || | || |||||| ||| ||||||| || ||||||| |||| |
Sbjct 1015 TCAATAAAACTGTAGTTGAT-----AGGCAAGGTTGCGTAATTAACACTTGGGCTGATAT 1069
Query 212481 TCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCC 212540
| ||||| | || ||||||||||||||||||||||| ||| | ||||| || ||||||||
Sbjct 1070 TATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 1129
Query 212541 ACTTGACTTAGC 212552
|| ||| ||||
Sbjct 1130 TCTAGACCTAGC 1141
>seq21559
Length=2991
Score = 188 bits (208), Expect = 1e-42
Identities = 648/1018 (64%), Gaps = 63/1018 (6%)
Strand=Plus/Plus
Query 211606 TATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGC-TT 211664
||| |||| |||||||||||| | || ||||| | | | | | || | || ||
Sbjct 1923 TATATTGGATGGTTTGGTGTTTTGATAATCCCTACTTTATTGACCGTAA-ATTTTGTATT 1981
Query 211665 TATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGC 211724
||| ||||| ||||| ||||| |||| || ||||| || || || | |||||| |
Sbjct 1982 TATTGTAGCTTTCATTGCAGCGTCTCCAGTAGATATTGATGGTATTCATGAACCTATTTT 2041
Query 211725 TGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGC 211784
||| || | | || || ||||| || || | | ||| || ||| ||| | ||
Sbjct 2042 TGGATCTCTACTTTACGGAAACAATATTATTTTTTATGCCATTATTCATATTTCTGAGGC 2101
Query 211785 AATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAA 211844
| ||||| || || || || || |||||||||||| || ||||||| ||| | || ||
Sbjct 2102 TACAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTATTGATGACTGGTTATATAA 2161
Query 211845 TGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGG 211904
||| || ||||| || | | | | |||| | | || | | ||| |||||
Sbjct 2162 TGGCGGGCCTTATGAGCTAATTGTTCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGG 2221
Query 211905 AAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTC 211964
| ||||||||||| | | || | |||||||| |||||||| | |||| ||| |
Sbjct 2222 TTGTGAGTGGGAACTTAGTTTCAGTCTGGGTATGCGCCCTTGGATTACTATTGCATATCC 2281
Query 211965 AGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATT 212024
||| ||||| |||| ||| || | ||| | | |||||| | ||||| || ||
Sbjct 2282 AGCTCCTGTTGCAGCTGCTACTACTATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTT 2341
Query 212025 CTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGC 212084
| || ||||||||||||| || | | || |||||||| ||| | ||||||||||
Sbjct 2342 TTATGATGGTATGCCTTTAGAAATCTTCTGTACTTTCAACTTTATGATTCTATTCCAAGC 2401
Query 212085 AGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTC-GGTG 212143
| | ||||||||||||||||||| || ||| || || || || | ||| | |
Sbjct 2402 TTAGGAAGACATCCTTATGCACCCATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAG 2461
Query 212144 GAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCA 212203
| ||||| || |||||| ||| | | || ||| | || | |||||||
Sbjct 2462 CTCCTTTATTTAGTGTTATGCATAATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCA 2521
Query 212204 CTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACA 212263
| | || || || | | |||| ||||| ||||| ||||| || ||||| |
Sbjct 2522 CAGAAAACGAATCTGTTAATGAAGATTACCGATTCGGTCAAGAGGAAGAAACTTATAATA 2581
Query 212264 TCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTAT---------GC--ATC 212312
| || ||||| ||||| || || || || | ||||| || ||| || ||
Sbjct 2582 TTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATAATATTGTAGCTGCTC 2641
Query 212313 A-------------------------------------TTCAACAACAGCAGAAGTTTAC 212335
| ||||||||| | |||||
Sbjct 2642 ATGGTTATTTTGGCCGATTGATATTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 2701
Query 212336 ACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCA 212395
| |||||| | | | | |||| ||| || || | ||||| || || | ||||| |||
Sbjct 2702 ATTTCTTCATAGAAACTTGGCTTGTAATAGGTATCTGGTTCACGGCTTTAGGTATTAGCA 2761
Query 212396 CAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTA 212455
| || || ||||| ||||| | | ||||||||| |||| || |||||| ||||
Sbjct 2762 CTATAGCTTTCAATCTAAACGAGTGCAACTTCAATCAATATGTAGTTGATAGTGAAGGTG 2821
Query 212456 AGGTTGTTCCTACTTGGGGTGATGTT---------CTTAACAGAGCAAACCTTGGTATGG 212506
| || ||||||| |||| || ||||| | | ||| |||||||||
Sbjct 2822 GCATAATTAACACTTGGGCTGATATTATTAACTGGGTTAACTGGGTTAACTTTGGTATGG 2881
Query 212507 AAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564
| |||||||| ||| | ||||| || |||||||| || | | ||| |||||| |||
Sbjct 2882 AGGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGGCCTAG---CTGCTATCGA 2936
>seq14731
Length=28268
Score = 183 bits (202), Expect = 5e-41
Identities = 235/324 (73%), Gaps = 0/324 (0%)
Strand=Plus/Minus
Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286
||||||| ||||| ||||| ||||| || ||||| || || | ||| ||||| || ||
Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079
Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346
|| | | ||||| || |||| |||||||| | ||||| |||||| |
Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019
Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406
||| | |||||||| || || | ||||| || || | | ||| |||| ||||| |||
Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959
Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466
|||||||| | ||||||||||| ||||| || |||||| |||| || ||
Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899
Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526
||||||| | || || ||||| | || ||||||||||||||||||||||| ||| | |||
Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839
Query 212527 GCACACAACTTCCCACTTGACTTA 212550
|| || |||||||| || ||| ||
Sbjct 20838 GCTCATAACTTCCCTCTAGACCTA 20815
>seq1192
Length=17806
Score = 149 bits (164), Expect = 1e-30
Identities = 231/328 (70%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 212225 ATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACT 212284
||||||||| ||||| ||||| ||||| || |||||||| || ||||| ||||| || |
Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390
Query 212285 TCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCC 212344
|| || | || | |||| ||||||||| | |||||| ||||||
Sbjct 2391 CTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447
Query 212345 TCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCAT 212404
| ||| | | |||| | || || | ||||| || || | ||||| |||| ||||| |
Sbjct 2448 TAGCAGCTTTGCCTAT-ATAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506
Query 212405 TCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTC 212464
|||||||||| | ||||||||||| |||| || |||||| |||| | ||
Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTA 2566
Query 212465 CTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAA 212524
| ||||| |||| || |||| | || ||||||||| || |||||| ||| ||| | |
Sbjct 2567 ACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTA 2626
Query 212525 ATGCACACAACTTCCCACTTGACTTAGC 212552
|||| || |||||||| | ||| ||||
Sbjct 2627 ATGCTCATAACTTCCCTCCAGACCTAGC 2654
Score = 89.7 bits (98), Expect = 8e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956
|||||||| | ||||||||||| | |||| | |||||||| |||||||| ||||
Sbjct 2051 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTT 2110
Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016
|| |||||||| ||||| |||| ||| ||||| ||| | | |||||| |||||||
Sbjct 2111 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAA 2170
Query 212017 GG 212018
||
Sbjct 2171 GG 2172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807066659387320
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