Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq10156 304 2e-77 seq6213 300 3e-76 seq21559 188 1e-42 seq14731 183 5e-41 seq1192 149 1e-30 >seq10156 Length=9543 Score = 304 bits (336), Expect = 2e-77 Identities = 597/877 (68%), Gaps = 7/877 (1%) Strand=Plus/Plus Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 |||| ||||| ||| | ||| | || ||||| | | || ||||||| | ||| | Sbjct 541 TAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTGGAT 600 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | || || ||||| || || | |||||| || ||| |||| || || | Sbjct 601 CTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTATAG 660 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| || || || ||||||||| || || ||||||| ||| | || ||||| | Sbjct 661 GTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCG 720 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 |||||| || | | | | ||||| | | || | | |||||||| | Sbjct 721 GTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTG 780 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | | || | ||||||| |||||||| | |||| |||||||||| Sbjct 781 AGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCAC 840 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 || | |||| ||| | |||| ||| | | |||||| | ||||| || || || Sbjct 841 CTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTA 900 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | |||||||||||||| || || || |||||||| ||| | ||||||| || | | Sbjct 901 ATGGTATGCCTTTAGGAATTCTCGGTACTTTCAACTTTATGATTCTATTCCATGCTTAGC 960 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTG--CAGGTATGTTCGGTGGAGC 212147 | |||||||||||||||||||| || ||| || || | | ||| ||| |||| | Sbjct 961 ACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTA--TTCAGTGGCTC 1018 Query 212148 ATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTT-ATCCGTGAAACCACTG 212206 ||||| ||||||||| ||||| |||| || | || || || | |||||||| | Sbjct 1019 CTTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTTTAGTTTGATAAGAGAAACCACAG 1077 Query 212207 GTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCG 212266 || || || | | |||| ||||| |||| ||||| || || || || Sbjct 1078 AAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTA 1137 Query 212267 TTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCA 212326 | ||||| ||||| || || || | | ||||| | ||||| ||||||||| Sbjct 1138 TAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTC 1197 Query 212327 GAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGG 212386 | |||||| |||||| | ||| | |||||||| | || | ||| | | || | Sbjct 1198 GTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTTTAA 1256 Query 212387 GTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATG 212446 |||| |||||||||| ||||||||||| |||||||||||||| |||| || |||||| Sbjct 1257 GTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGATA 1316 Query 212447 CATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGG 212506 |||| | || ||||||| |||| || |||| | | ||| ||||||||| Sbjct 1317 GTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATGG 1376 Query 212507 AAGTTATGCACGAAAGAAATGCACACAACTTCCCACT 212543 | |||||||| ||| ||||| || || ||||| || Sbjct 1377 AGGTTATGCATGAACATAATGCTCATAATTTCCCTCT 1413 >seq6213 Length=1415 Score = 300 bits (332), Expect = 3e-76 Identities = 576/852 (68%), Gaps = 49/852 (6%) Strand=Plus/Plus Query 211744 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTAT 211803 || || || || |||||||| || |||| |||| | || || |||| ||||| | Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355 Query 211804 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTG 211863 || || |||||||||||| | ||||||| ||| | || |||||||||||||| || | Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415 Query 211864 GTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCA 211923 | | | ||||| | | || | | |||||||| | ||||||||||| Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475 Query 211924 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCT 211983 | || | |||||||||||||||| | |||||| |||||||| || || || | | Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535 Query 211984 TTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGG------------TTCAT--TCT--- 212026 | ||||| ||| | || |||||| |||| ||| ||| | ||| Sbjct 536 ATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCTTGATCTACC 595 Query 212027 --------CAG------------ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTT 212066 ||| | ||||||| |||||| || || || || |||||||| Sbjct 596 CAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAACTT 655 Query 212067 CATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGT 212126 ||| |||||||||||| || || |||||||||||||||||||| || ||| ||| || Sbjct 656 TATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGT 715 Query 212127 TGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTC 212186 || | | ||||| || | ||||| || |||||| |||| ||||| || | || Sbjct 716 AGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTT-TCTTGGTAACTTTTA 774 Query 212187 ACTT-ATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAG 212245 || || | |||||||| | || || || | ||||| ||||| ||| Sbjct 775 GTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTAAG 834 Query 212246 AAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGT 212305 | ||||| | ||||| || | ||||| ||||| || || || || | ||||| | Sbjct 835 AGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTCAT 894 Query 212306 ATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCT 212365 ||| ||||||||| | ||||||| |||||| | || |||||||| || | Sbjct 895 ATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCCTGTGATAT 954 Query 212366 GTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACT 212425 || | ||||| || ||| | ||||| |||| ||||| | ||||||||| ||||||| Sbjct 955 GTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAACT 1014 Query 212426 TCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTG-----TTCCTACTTGGGGTGATGT 212480 |||| || | || |||||| ||| ||||||| || ||||||| |||| | Sbjct 1015 TCAATAAAACTGTAGTTGAT-----AGGCAAGGTTGCGTAATTAACACTTGGGCTGATAT 1069 Query 212481 TCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCC 212540 | ||||| | || ||||||||||||||||||||||| ||| | ||||| || |||||||| Sbjct 1070 TATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 1129 Query 212541 ACTTGACTTAGC 212552 || ||| |||| Sbjct 1130 TCTAGACCTAGC 1141 >seq21559 Length=2991 Score = 188 bits (208), Expect = 1e-42 Identities = 648/1018 (64%), Gaps = 63/1018 (6%) Strand=Plus/Plus Query 211606 TATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGC-TT 211664 ||| |||| |||||||||||| | || ||||| | | | | | || | || || Sbjct 1923 TATATTGGATGGTTTGGTGTTTTGATAATCCCTACTTTATTGACCGTAA-ATTTTGTATT 1981 Query 211665 TATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGC 211724 ||| ||||| ||||| ||||| |||| || ||||| || || || | |||||| | Sbjct 1982 TATTGTAGCTTTCATTGCAGCGTCTCCAGTAGATATTGATGGTATTCATGAACCTATTTT 2041 Query 211725 TGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGC 211784 ||| || | | || || ||||| || || | | ||| || ||| ||| | || Sbjct 2042 TGGATCTCTACTTTACGGAAACAATATTATTTTTTATGCCATTATTCATATTTCTGAGGC 2101 Query 211785 AATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAA 211844 | ||||| || || || || || |||||||||||| || ||||||| ||| | || || Sbjct 2102 TACAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTATTGATGACTGGTTATATAA 2161 Query 211845 TGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGG 211904 ||| || ||||| || | | | | |||| | | || | | ||| ||||| Sbjct 2162 TGGCGGGCCTTATGAGCTAATTGTTCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGG 2221 Query 211905 AAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTC 211964 | ||||||||||| | | || | |||||||| |||||||| | |||| ||| | Sbjct 2222 TTGTGAGTGGGAACTTAGTTTCAGTCTGGGTATGCGCCCTTGGATTACTATTGCATATCC 2281 Query 211965 AGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATT 212024 ||| ||||| |||| ||| || | ||| | | |||||| | ||||| || || Sbjct 2282 AGCTCCTGTTGCAGCTGCTACTACTATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTT 2341 Query 212025 CTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGC 212084 | || ||||||||||||| || | | || |||||||| ||| | |||||||||| Sbjct 2342 TTATGATGGTATGCCTTTAGAAATCTTCTGTACTTTCAACTTTATGATTCTATTCCAAGC 2401 Query 212085 AGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTC-GGTG 212143 | | ||||||||||||||||||| || ||| || || || || | ||| | | Sbjct 2402 TTAGGAAGACATCCTTATGCACCCATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAG 2461 Query 212144 GAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCA 212203 | ||||| || |||||| ||| | | || ||| | || | ||||||| Sbjct 2462 CTCCTTTATTTAGTGTTATGCATAATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCA 2521 Query 212204 CTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACA 212263 | | || || || | | |||| ||||| ||||| ||||| || ||||| | Sbjct 2522 CAGAAAACGAATCTGTTAATGAAGATTACCGATTCGGTCAAGAGGAAGAAACTTATAATA 2581 Query 212264 TCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTAT---------GC--ATC 212312 | || ||||| ||||| || || || || | ||||| || ||| || || Sbjct 2582 TTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATAATATTGTAGCTGCTC 2641 Query 212313 A-------------------------------------TTCAACAACAGCAGAAGTTTAC 212335 | ||||||||| | ||||| Sbjct 2642 ATGGTTATTTTGGCCGATTGATATTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 2701 Query 212336 ACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCA 212395 | |||||| | | | | |||| ||| || || | ||||| || || | ||||| ||| Sbjct 2702 ATTTCTTCATAGAAACTTGGCTTGTAATAGGTATCTGGTTCACGGCTTTAGGTATTAGCA 2761 Query 212396 CAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTA 212455 | || || ||||| ||||| | | ||||||||| |||| || |||||| |||| Sbjct 2762 CTATAGCTTTCAATCTAAACGAGTGCAACTTCAATCAATATGTAGTTGATAGTGAAGGTG 2821 Query 212456 AGGTTGTTCCTACTTGGGGTGATGTT---------CTTAACAGAGCAAACCTTGGTATGG 212506 | || ||||||| |||| || ||||| | | ||| ||||||||| Sbjct 2822 GCATAATTAACACTTGGGCTGATATTATTAACTGGGTTAACTGGGTTAACTTTGGTATGG 2881 Query 212507 AAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 | |||||||| ||| | ||||| || |||||||| || | | ||| |||||| ||| Sbjct 2882 AGGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGGCCTAG---CTGCTATCGA 2936 >seq14731 Length=28268 Score = 183 bits (202), Expect = 5e-41 Identities = 235/324 (73%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||| ||||| ||||| ||||| || ||||| || || | ||| ||||| || || Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 || | | ||||| || |||| |||||||| | ||||| |||||| | Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 ||| | |||||||| || || | ||||| || || | | ||| |||| ||||| ||| Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 |||||||| | ||||||||||| ||||| || |||||| |||| || || Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| | || || ||||| | || ||||||||||||||||||||||| ||| | ||| Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839 Query 212527 GCACACAACTTCCCACTTGACTTA 212550 || || |||||||| || ||| || Sbjct 20838 GCTCATAACTTCCCTCTAGACCTA 20815 >seq1192 Length=17806 Score = 149 bits (164), Expect = 1e-30 Identities = 231/328 (70%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 212225 ATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACT 212284 ||||||||| ||||| ||||| ||||| || |||||||| || ||||| ||||| || | Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 212285 TCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCC 212344 || || | || | |||| ||||||||| | |||||| |||||| Sbjct 2391 CTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 212345 TCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCAT 212404 | ||| | | |||| | || || | ||||| || || | ||||| |||| ||||| | Sbjct 2448 TAGCAGCTTTGCCTAT-ATAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 212405 TCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTC 212464 |||||||||| | ||||||||||| |||| || |||||| |||| | || Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTA 2566 Query 212465 CTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAA 212524 | ||||| |||| || |||| | || ||||||||| || |||||| ||| ||| | | Sbjct 2567 ACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTA 2626 Query 212525 ATGCACACAACTTCCCACTTGACTTAGC 212552 |||| || |||||||| | ||| |||| Sbjct 2627 ATGCTCATAACTTCCCTCCAGACCTAGC 2654 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| | ||||||||||| | |||| | |||||||| |||||||| |||| Sbjct 2051 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTT 2110 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| ||||| |||| ||| ||||| ||| | | |||||| ||||||| Sbjct 2111 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAA 2170 Query 212017 GG 212018 || Sbjct 2171 GG 2172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807066659387320