Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq10156 282 5e-71 seq6213 255 7e-63 seq21559 219 5e-52 seq14731 188 8e-43 seq1192 174 2e-38 >seq10156 Length=9543 Score = 282 bits (312), Expect = 5e-71 Identities = 605/892 (68%), Gaps = 14/892 (2%) Strand=Plus/Plus Query 170763 TTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGG 170822 || |||| ||||| || | ||| |||| ||||| | | || | |||| || | Sbjct 538 TTATAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTG 597 Query 170823 GTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAA 170882 | ||| | | || || ||||| || || | |||||| | ||| |||| || | Sbjct 598 GATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTA 657 Query 170883 TAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACG 170942 |||| || ||||| || || || ||||||||| | |||| || || ||||| || || | Sbjct 658 TAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATG 717 Query 170943 GAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTA 171002 | ||||||| || || || || | ||||| | |||| | || ||||||||| Sbjct 718 GCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTC 777 Query 171003 GACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAG 171062 | |||||||||| | ||| | || ||| |||||||| | | ||||| |||| Sbjct 778 GTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAG 837 Query 171063 CACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCT 171122 ||||| | | || || |||| | ||| | | || ||| | ||||| || || | Sbjct 838 CACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTT 897 Query 171123 CTGATGGTATGCCACTAGGTAT-CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 171181 || |||||||||| |||| || ||| ||||| |||||||| ||| | | ||||| || Sbjct 898 CTAATGGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATGCT 956 Query 171182 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC--AGGTATGTTCGGTG 171239 | |||||||| || |||||||| || || ||| || |||| | |||| || ||| Sbjct 957 TAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTAT--TCAGTG 1014 Query 171240 GTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAA 171299 | | || ||||| ||||| ||||| | || || | | | | || ||||| || | Sbjct 1015 GCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCA 1074 Query 171300 CTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACA 171359 | || || || | || | | || ||||| |||| |||||||| || || | Sbjct 1075 CAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATA 1134 Query 171360 TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACT 171419 || | ||||||||||| || || || ||| ||||| | ||||| |||||||||| Sbjct 1135 TTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACT 1194 Query 171420 CTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTA 171479 ||||||| ||||| |||||| | || | |||||| || | ||| | | || Sbjct 1195 CTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTT 1253 Query 171480 TGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAG 171539 | |||| | |||||||| |||||||| ||||||||||||||||| |||| || || | Sbjct 1254 TAAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTG 1313 Query 171540 AT-GCAAACG--GAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTG 171596 || | || | | | ||| || || |||| ||| || |||| | | ||| ||| Sbjct 1314 ATAGTGAAGGTCGCATAATT-AAC--ACTTGGGCTGATATTATTAATCGGGTTAACTTTG 1370 Query 171597 GAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 171648 | ||||| |||||||||||| ||||| || || ||||| ||| |||||| Sbjct 1371 GTATGGAGGTTATGCATGAACATAATGCTCATAATTTCCCTCTA-CCCTAGC 1421 >seq6213 Length=1415 Score = 255 bits (282), Expect = 7e-63 Identities = 569/852 (67%), Gaps = 49/852 (6%) Strand=Plus/Plus Query 170840 AACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTAT 170899 || || || || |||||||| | |||| |||| | || ||| | || ||||| | Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355 Query 170900 CCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTA 170959 || || ||||||||||| | | || || ||||| || || || |||||||| || | Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415 Query 170960 GTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCA 171019 || || | ||||| | |||| | || ||||||||| | |||||||||| Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475 Query 171020 TACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT---ATCT--- 171073 | | | ||| ||| | |||||| | ||| ||||| ||||| || || |||| Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535 Query 171074 ---GCAGCATT--TG-------CAGT-------------------ATTCCTTG-TGTATC 171101 || | || || || | ||| |||| | || | Sbjct 536 ATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCTTGATCTACC 595 Query 171102 CATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACT 171161 || |||| |||| | || | ||||||||||| |||| || || ||||| ||||||| Sbjct 596 CAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAACT 654 Query 171162 TCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTG 171221 | ||| |||| ||||||| || |||||||| || |||||||| || || ||| ||| | Sbjct 655 TTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCG 714 Query 171222 TAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTT 171281 |||| | | ||||| || || ||||||| ||||| |||| | || || | | Sbjct 715 TAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGTAACTTTTA 774 Query 171282 CTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAG 171341 | | || || || || || || || || | || | || || ||||| ||| Sbjct 775 GTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTAAG 834 Query 171342 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 171401 | ||||||| ||||| ||| | ||||||||||| || || || |||| ||||| | Sbjct 835 AGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTCAT 894 Query 171402 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 171461 ||| ||||||||| |||||| ||||| |||||| | | | | ||||| | | Sbjct 895 ATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCCTGTGATAT 954 Query 171462 GTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 171521 || | ||||| || ||| | ||||| | || ||||| | |||||| ||| ||||||| Sbjct 955 GTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAACT 1014 Query 171522 TCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG---TACCAACA--TGGGGAGATGT 171576 |||| || | ||||| || | || ||| ||| | |||| |||| ||| | Sbjct 1015 TCAATAAAAC---TGTAGTTG--ATAGGCAAGGTTGCGTAATTAACACTTGGGCTGATAT 1069 Query 171577 TCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCC 171636 | ||||| | || |||||||| |||||||||||||||||| | ||||| || |||||||| Sbjct 1070 TATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 1129 Query 171637 ACTAGACCTAGC 171648 ||||||||||| Sbjct 1130 TCTAGACCTAGC 1141 >seq21559 Length=2991 Score = 219 bits (242), Expect = 5e-52 Identities = 495/740 (67%), Gaps = 3/740 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||| ||||| |||| | ||||||||||||| | || |||| ||||||||||| || Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGT-TTCATTGTAGCATTCATCGCTGCTCC 170784 || ||||| | | | || | | |||| || |||||||| ||||| || || | Sbjct 1947 ATAATCCCTACTTTATTGACCGTAAATT-TTGTATTTATTGTAGCTTTCATTGCAGCGTC 2005 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || ||||| || || ||| | | || || ||||| Sbjct 2006 TCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAA 2065 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 || || | | ||| | ||| ||| | || | ||| || || || || || || Sbjct 2066 TATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAAT 2125 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 ||||||||||| |||| || || ||||| || || || || ||||| || || || | Sbjct 2126 ATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGT 2185 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||| | |||| | || || |||||| | |||||||||| | ||| Sbjct 2186 TCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAG 2245 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 || || ||| | |||||||| | | ||||| |||| ||||| | || || | | Sbjct 2246 TCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTAC 2305 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 | ||| | | || ||| | ||||| || || | |||||||||||| ||| || Sbjct 2306 TATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAAT 2365 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 || |||| |||||||| ||| | | |||||||| | | |||| || |||||||| Sbjct 2366 CTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCC 2425 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTC-GGTGGTAGTCTCTTCAGTGCAATGCACG 171263 || || ||| || ||||| || | ||| | | | | | || |||| ||||| Sbjct 2426 ATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATA 2485 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 ||| | | || ||| | | || || || || || || ||||| | || | | Sbjct 2486 ATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAG 2545 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 || ||||| ||||| |||||||| ||||| ||||| ||||||||||| || || | Sbjct 2546 ATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTG 2605 Query 171384 GTAGATTAATCTTCCAGTAT 171403 | |||| ||||| || ||| Sbjct 2606 GCCGATTGATCTTTCAATAT 2625 Score = 93.3 bits (102), Expect = 5e-14 Identities = 172/250 (69%), Gaps = 13/250 (5%) Strand=Plus/Plus Query 171410 TTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGG 171469 ||||||||||||||||| ||||| |||||| | | | | |||| | || | ||| Sbjct 2680 TTCAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATAGGTATCTGG 2739 Query 171470 TTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAA 171529 || || || | ||||| | || || || ||||| || |||| | ||||||||| ||| Sbjct 2740 TTCACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAACTTCAATCAA 2799 Query 171530 TCAGTTGTAGAT-GCAAACG-GAAAGATTGTACCAACATGGGGAGATGTT---------C 171578 | || || ||| | || | | | | | || || |||| ||| || Sbjct 2800 TATGTAGTTGATAGTGAAGGTGGCATAATTAAC--ACTTGGGCTGATATTATTAACTGGG 2857 Query 171579 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 171638 ||||| | | ||| |||| ||||| |||||||||||| | ||||| || |||||||| | Sbjct 2858 TTAACTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAACTTCCCTC 2917 Query 171639 TAGACCTAGC 171648 ||| |||||| Sbjct 2918 TAGGCCTAGC 2927 >seq14731 Length=28268 Score = 188 bits (208), Expect = 8e-43 Identities = 233/316 (74%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391 ||||| ||||| |||||||| ||||| ||||| | ||||||||| || || || ||| Sbjct 21129 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTTGGCCAATTG 21070 Query 171392 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 171451 ||||| || |||| |||||||||||||||| |||| |||||| | || | | Sbjct 21069 ATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTAGCAGCTTGG 21010 Query 171452 CCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 171511 |||||| | || | ||||| || || | | ||| | || ||||| |||||||| ||| Sbjct 21009 CCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTCAACCTAAAC 20950 Query 171512 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGG 171570 | ||||||||||| ||||| || || ||| | || | | || || | |||| Sbjct 20949 AGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAACA-CTTGGGC 20891 Query 171571 AGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAA 171630 || || ||||| | || |||||||| |||||||||||||||||| | ||||| || || Sbjct 20890 TTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAA 20831 Query 171631 CTTCCCACTAGACCTA 171646 |||||| ||||||||| Sbjct 20830 CTTCCCTCTAGACCTA 20815 >seq1192 Length=17806 Score = 174 bits (192), Expect = 2e-38 Identities = 235/322 (73%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391 ||||| ||||| |||||||| ||||||||||| ||||||||||| || | || |||| Sbjct 2342 TTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTCTGGCCGATTG 2401 Query 171392 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 171451 | | | |||| ||||||||||||||||| ||||| |||||| | || | || Sbjct 2402 A---TAAAATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTAGCAGCTTTG 2458 Query 171452 CCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 171511 ||| || | || | ||||| || || | ||||| | || ||||| |||||||| ||| Sbjct 2459 CCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTTTCAACCTAAAC 2517 Query 171512 GGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG---TACCAACA--T 171566 | ||||||||||| |||| ||||| || || | ||| ||| | |||| | Sbjct 2518 AGGTTCAACTTCAATTAATC---TGTAGTTGATAATG--AAGGTTGCATAATTAACATTT 2572 Query 171567 GGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCAC 171626 ||| ||| || |||| | || |||||||| || |||||| ||||||| | ||||| | Sbjct 2573 GGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTAATGCTC 2632 Query 171627 ACAACTTCCCACTAGACCTAGC 171648 | |||||||| | ||||||||| Sbjct 2633 ATAACTTCCCTCCAGACCTAGC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569923808761080