Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq247 105 6e-18 seq37694 104 2e-17 seq6888 95.1 1e-14 seq19360 91.5 1e-13 seq8519 91.5 1e-13 seq14506 86.0 6e-12 >seq247 Length=47399 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||||||||| | |||||||| | ||||| | ||| ||||| Sbjct 33654 AATGCAAATCTTTGTAAAAACTCTCACTGGAAAGACCATCACTCTGGAAGTAGAAAGCTC 33595 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||| || | || || ||| ||| ||||| || || || ||||| || || Sbjct 33594 CGACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAGGAGGGAATCCCTCCGGACCA 33535 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||| || || | | ||||| ||||| ||||||| | | | | | |||||||| Sbjct 33534 GCAAAGGCTGATCTTTGCTGGCAAGCAACTTGAAGATGGTCGGACCCTTGCAGACTATAA 33475 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || ||| ||||| |||| || Sbjct 33474 TATCCAAAAGGAGTCGACTCTCCATTTGGTTCT 33442 >seq37694 Length=247 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||||||||| | |||||||| | ||||| | ||| ||||| Sbjct 212 AATGCAAATCTTTGTAAAAACTCTCACTGGAAAGACCATCACTCTGGAAGTAGAAAGCTC 153 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||| || | || || ||| ||| ||||| || || || ||||| || || Sbjct 152 CGACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAGGAGGGAATCCCTCCGGACCA 93 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||| || || | | ||||| ||||| ||||||| | | | | | |||||||| Sbjct 92 GCAAAGGCTGATCTTTGCTGGCAAGCAACTTGAAGATGGTCGGACCCTTGCAGACTATAA 33 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGT 26977 || ||||| || || ||| ||||| |||| Sbjct 32 TATCCAAAAGGAGTCGACTCTCCATTTGGT 3 >seq6888 Length=12617 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | |||||||| | |||||| | || | ||| | Sbjct 7666 ATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCTTGGAGGTTGAAAGCTAG 7607 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| || ||| ||||| ||||| || || || ||||| Sbjct 7606 GACACCATTGACAACGTTAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCAC 7547 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | || || || || ||||||| | ||| | | |||||||||| Sbjct 7546 CAGAGGCTGATCTTTGCTGGGAAGCAGCTTGAAGATGGTCGAACCCTGGCCGACTATAAC 7487 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || | ||||||||||| Sbjct 7486 ATCCAGAAGGAATCCACCTTGCATCTGGTCCT 7455 >seq19360 Length=6746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| |||||||| ||||| ||||| || || ||||| | | || || ||| | ||| Sbjct 5252 GACAAGGAAGGGATTCCTCCTGATCAGCAGAGGCTCATCTTTGCTGGGAAGCAATTGGAA 5193 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||| | | ||| ||||| |||||||| || ||||| || | || |||| || Sbjct 5192 GATGGGCGAACCCT-AGCTGACTACAACATTCAGAAGGAATCCACGCTTCACTTGGTGCT 5134 Query 26981 GAGACTTAGAGGAGGAA 26997 ||||||||| ||||||| Sbjct 5133 GAGACTTAGGGGAGGAA 5117 >seq8519 Length=37620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| |||||||| ||||| ||||| || || ||||| | | || || ||| | ||| Sbjct 7600 GACAAGGAAGGGATTCCTCCTGATCAGCAGAGGCTCATCTTTGCTGGGAAGCAATTGGAA 7659 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||| | | ||| ||||| |||||||| || ||||| || | || |||| || Sbjct 7660 GATGGGCGAACCCT-AGCTGACTACAACATTCAGAAGGAATCCACGCTTCACTTGGTGCT 7718 Query 26981 GAGACTTAGAGGAGGAA 26997 ||||||||| ||||||| Sbjct 7719 GAGACTTAGGGGAGGAA 7735 >seq14506 Length=85774 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || |||||||| ||| | |||||| | || |||| | Sbjct 52629 ATGCAAATCTTTGTCAAGACCTTAACTGGGAAAACAATCACCCTTGAGGTAGAGAGCTCC 52570 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| |||||||| || || ||||| |||||| Sbjct 52569 GACACTATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGCATTCCTCCAGATCAA 52510 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || || || ||||| |||| || | | | ||||||||| Sbjct 52509 CAACGTCTTATCTTTGCTGGGAAGCAGCTCGAGGATGGGAGGACCCTGGCAGACTATAAC 52450 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || | || ||||||| Sbjct 52449 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 52418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478372827197840