Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9418 113 4e-20 seq9952 102 7e-17 seq25669 98.7 9e-16 seq26443 89.7 4e-13 seq37694 86.0 5e-12 seq247 86.0 5e-12 seq5564 84.2 2e-11 >seq9418 Length=21897 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || ||||||| | ||||||||| || | Sbjct 10868 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACGATTACTTTGGAAGTCGAGAGCAGC 10927 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 10928 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCTCCGGATCAG 10987 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| ||||| || | | | | | | |||||| || Sbjct 10988 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCTTGGCCGATTACAAT 11047 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| | ||| | ||| | || | || ||||| Sbjct 11048 ATTCAGAAGGAGTCTACCCTGCATCTTGTGCTCAGGCTCAGGGGAGG 11094 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || ||| | || || ||| || | Sbjct 11096 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCAGC 11155 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| ||||| ||||| ||||| || ||||| || || Sbjct 11156 GACACCATCGACAACGTGAAAGCTAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 11215 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| ||||| || ||||| | | | | | |||||| ||| Sbjct 11216 CAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGTACTTTGGCCGATTACAAC 11275 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || ||||| || |||| Sbjct 11276 ATTCAGAAGGAATCAACCCTTCA 11298 >seq9952 Length=36685 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| || |||| || ||| | Sbjct 3913 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACTCTCGAGGTTGAGAGTTCC 3854 Query 24051 GACACCATCGAGCAA-GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||||| |||| || ||| ||||| ||||| |||||||| ||||| || || Sbjct 3853 GATACCATCG-GCAACGTTAAAGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGAGCA 3795 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || || | | ||| ||||| |||||||||| | | | | ||||| || Sbjct 3794 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGATTACAA 3735 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || |||||||| | ||| | ||||| |||||||||||||| Sbjct 3734 CATCCAGAAGGAATCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGG 3687 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || | || ||| |||| |||||| | Sbjct 4141 ATGCAGATCTTCGTCAAAACCCTTACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 4082 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| || || Sbjct 4081 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAG 4022 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | || ||| ||||| || || || | | | || ||| ||||| || Sbjct 4021 CAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCG-TACTCTAGCTGATTACAA 3963 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || | || || ||| | ||||||||||||| Sbjct 3962 CATCCAGAAGGAATCGACTCTCCACTTGGTGCTGCGATTGAGAGGAGG 3915 >seq25669 Length=30460 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || ||||||| |||| || ||| | Sbjct 1719 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTTGAGAGTTCC 1660 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || || ||||| ||||| ||||| || ||||| ||||| Sbjct 1659 GATACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGATCAG 1600 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 | ||| || || | | ||| ||||| ||||| |||| | | | | | |||| |||| || Sbjct 1599 CGGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACCCT-AGCGGATTACAA 1541 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || |||||||| ||||| | ||| | ||||||||||||| Sbjct 1540 CATCCAGAAGGAATCTACGCTTCATCTGGTGCTGCGATTGAGAGGAGG 1493 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| |||| |||||| | Sbjct 8091 ATGCAGATTTTCGTCAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 8150 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| || ||||| ||||| || || Sbjct 8151 GACACCATCGATAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 8210 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||||||||| ||||| || | | | | || |||||| ||| Sbjct 8211 CAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTCGCCGATTACAAC 8270 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | || || | ||||||||||| Sbjct 8271 ATCCAGAAGGAATCGACTCTCCATCTCGTCTTGCGTTTGAGAGGAGG 8317 >seq26443 Length=10536 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || || | || ||| | || || ||| || Sbjct 9275 ATGCAAATCTTTGTGAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGT 9216 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || || || || || || || Sbjct 9215 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 9156 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || || ||||| || ||||| | | | | | | |||||| ||| Sbjct 9155 CAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGTACCTTGGCCGATTACAAC 9096 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| | ||| | || |||| |||| ||||| Sbjct 9095 ATTCAGAAGGAGTCTACCCTCCATCTCGTCCTAAGGCTGAGGGGAGG 9049 >seq37694 Length=247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| | |||||||| | || || | ||||| || | Sbjct 212 AATGCAAATCTTTGTAAAAACTCTCACTGGAAAGACCATCACTCTGGAAGTAGAAAGCTC 153 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| || | || || ||| ||| ||||| || || || ||||| || || Sbjct 152 CGACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAGGAGGGAATCCCTCCGGACCA 93 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || ||||| | | ||||||||||| ||||||| | | | | || ||||| Sbjct 92 GCAAAGGCTGATCTTTGCTGGCAAGCAACTTGAAGATGGTCGGACCCTTGCAGACTATAA 33 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || | ||||| || Sbjct 32 TATCCAAAAGGAGTCGACTCTCCATTTGGT 3 >seq247 Length=47399 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| | |||||||| | || || | ||||| || | Sbjct 33654 AATGCAAATCTTTGTAAAAACTCTCACTGGAAAGACCATCACTCTGGAAGTAGAAAGCTC 33595 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| || | || || ||| ||| ||||| || || || ||||| || || Sbjct 33594 CGACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAGGAGGGAATCCCTCCGGACCA 33535 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || ||||| | | ||||||||||| ||||||| | | | | || ||||| Sbjct 33534 GCAAAGGCTGATCTTTGCTGGCAAGCAACTTGAAGATGGTCGGACCCTTGCAGACTATAA 33475 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || | ||||| || Sbjct 33474 TATCCAAAAGGAGTCGACTCTCCATTTGGT 33445 >seq5564 Length=26244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||||||||| | ||||| | || || ||| | | Sbjct 4661 ATGCAGATCTTTGTGAAGACCCTAACTGGAAAGACAATTACACTTGAGGTTGAGAGCTCC 4720 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| |||||| ||||| || || || || || ||||| Sbjct 4721 GACACGATTGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGAATTCCCCCGGATCAG 4780 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || || |||| |||| | | || |||||| Sbjct 4781 CAGAGGTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGGAGAACCTTGGCAGACTATAAC 4840 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || || || ||||||| || Sbjct 4841 ATTCAGAAGGAGTCAACCCTTCATTTGGT 4869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429682407221535