Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_007458.1
Length=37253
Score E
Sequences producing significant alignments: (Bits) Value
seq2 706 0.0
>seq2
Length=12201
Score = 706 bits (782), Expect = 0.0
Identities = 537/629 (85%), Gaps = 4/629 (1%)
Strand=Plus/Plus
Query 15554 GAATTCACCAAGAAAACCATTGAAATTACAA-AAAGTGTAGATGGTATCAAAGAAACGAT 15612
|| |||| |||| ||| |||| ||| | ||||||| |||||| | ||| || |
Sbjct 1804 GACTTCAGCAAGTCAACATATGAA-TTAGAGCAAAGTGTGGATGGTGTAAAATCTACTGT 1862
Query 15613 AACAAAAGTAGAAAATAATCAAAGTGGATTTGATAAGCGTGTTGCTACTGTAGAAAAAGA 15672
||| || || | |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1863 AACTAAGGTGCAGGATAACCAAGCCGGATTTGATAAGCGTGTTGCTACTGTAGAAAAAGA 1922
Query 15673 TGCAACTGCCATTAAACAAAATGTCTCTTTAATACAAAATACGCAGACAGAACAAGGAAG 15732
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1923 TGCAACTACCATTAAACAAAATGTCTCTTTCATACAAAATACGCAGACAGAACAAGGAAG 1982
Query 15733 GCAATTACAAGAGGCAAAAGCTGGATGGGAAAATACTGCAAAAGCACTTGAAGGTAAAGT 15792
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1983 ACAATTACAAGAGGCGAAAGCTGGATGGGAAAATACTGCGAAAGCACTGCAAGGTAAAGT 2042
Query 15793 TGAGCTTAAACAAGTAGAGGATTATGTTGCGGGGTTTAAGATTCCAGAGTTGAAGCAAAC 15852
||| ||||| |||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 2043 TGAACTTAAGCAAGTAGAAGATTATGTTGCTGGGTTTAAGATACCTGAGTTGAAGCAAAT 2102
Query 15853 AGTTAATCAGAATAAACAAGATTTATTAGATGAATTAGCCAATAAGCTTGCAACTGAGCA 15912
|||| || | |||||||||||||| || | ||| |||| ||||| |||||||| || ||
Sbjct 2103 AGTTGATAAAAATAAACAAGATTTGTTGGGAGAACTAGCTAATAAACTTGCAACGGAACA 2162
Query 15913 ATTTAATCAGAAAATGACTCTGATTGATAATCGTTTTACTATTAATGAACAGGGTATCAA 15972
||||||||||||||||||| |||| || || ||||| ||||| |||||| ||||||||||
Sbjct 2163 ATTTAATCAGAAAATGACTATGATCGACAACCGTTTCACTATCAATGAAGAGGGTATCAA 2222
Query 15973 TGCAGCAGCAAAAAAGACAGAAGTATATACGAAAACGCAAGCAGATGGACAATTCGCTAC 16032
||| ||||||||||||| ||||||||| || | | ||||||| |||||||||| || |
Sbjct 2223 TGCCGCAGCAAAAAAGAAAGAAGTATACACAATAGAGCAAGCAAATGGACAATTTGCAAA 2282
Query 16033 AGGTTCTTATGTAAGAGATATGGAAACTCGTCTTCAGTTAACTGAAAAGGGCGTTAGTAT 16092
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 2283 AGATTCTTATGTAAGAGATATGGAAACCCGTCTTCAGTTAACTGAAAAGGGCGTTAGTCT 2342
Query 16093 ATCTGTAAAAGAAAATGATGTAATAGCAGCCATTAACATGAGTAAAGAAAACATTAAGTT 16152
|||||||||||| || |||||||| ||||| |||| ||||| ||||||||||||| |||
Sbjct 2343 ATCTGTAAAAGAGAACGATGTAATTGCAGCATTTAATATGAGCAAAGAAAACATTACGTT 2402
Query 16153 AAATGCTGCAC-GAATAGATTTAGTTGGT 16180
||||| | || |||| | ||||| |||
Sbjct 2403 GAATGC-GAACAGAATTAACTTAGTAGGT 2430
Score = 325 bits (360), Expect = 9e-85
Identities = 263/318 (83%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 14456 AAACAAGAAATGATAGACCAGCTAGATAAACTAGTGAACGAAGCTAACGAAACCGCTAGT 14515
||||||||||| | || ||| |||||||| ||||||| || || || ||||| ||||||
Sbjct 25 AAACAAGAAATACTGGATCAGTTAGATAAATTAGTGAAAGATGCAAATGAAACAGCTAGT 84
Query 14516 AATGCAAAGAAGGAGTCAGAAGCAGCAAAAGCACTAGCTGAAAAAGTACAAGAGAATATT 14575
|||| ||||| || || |||||||| ||| || | ||||||||||||||||||||| ||
Sbjct 85 GATGCTAAGAAAGAATCCGAAGCAGCGAAAACATTGGCTGAAAAAGTACAAGAGAATCTT 144
Query 14576 AAAAATAATACCGTTGAAATTATAGAATCCAAGAATCCACCGACAACAGGACTGAAACCT 14635
|||||||| || || || || || ||| | |||||||||||||||||||| || | ||||
Sbjct 145 AAAAATAACACGGTAGACATCATTGAAGCAAAGAATCCACCGACAACAGGGCTTAGACCT 204
Query 14636 TTTAAAACGCTTTGGCGTGATATTAGTAACGGAAAGCCCGGTATTTTAAAAATATGGACA 14695
| ||| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||
Sbjct 205 TATAAGACACTTTGGCGTGATATTAGCAATGGAAAGCCTGGTATTTTGAAAATATGGACA 264
Query 14696 GGTACAGCGTGGGAATCAGTTGTACCCGATGTTGAATCTGTaaaaaaaGAAACATTAGAT 14755
|| |||| |||||||| || ||||| |||||||| || || || |||||||| || ||
Sbjct 265 GGCGCAGCTTGGGAATCGGTCGTACCTGATGTTGATTCAGTTAAGAAAGAAACGTTGGAA 324
Query 14756 CAGGTTAATAAAGATATT 14773
||||| | |||||||||
Sbjct 325 CAGGTGACAAAAGATATT 342
Score = 306 bits (338), Expect = 9e-79
Identities = 343/459 (75%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 17637 AAAAGGAGATGTTCAGTAATGGAAATCCaaaaaaaaTTAGTTGATCCAAGTAAGTATGGT 17696
||||||||||||| | ||||||||||| |||||| ||||||||| |||| || ||||||
Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245
Query 17697 ACAAAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATGAT 17756
|| ||||| || ||||||||||| || ||| || ||||| ||||| || ||||| |||
Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305
Query 17757 GCTCCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTCAT 17816
||| |||| | || |||||| ||| |||||| |||| |||| | || |||||||||
Sbjct 5306 GCTACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCAT 5365
Query 17817 ATTGCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGGCT 17876
||||| ||||| || || |||| | ||||||||||| || || ||||| || ||| |
Sbjct 5366 ATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCAT 5425
Query 17877 TGCGGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTATTCA 17936
||||| || || ||| || |||||| |||| ||| || ||||||||||| ||
Sbjct 5426 TGCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCT 5485
Query 17937 AAATCAGGAGGAGATAGATACTATAAAGCTGAGGATAATGCTGTTGATGTTGTACGACAA 17996
| || |||||| |||| |||||||| ||||||||||| | | || |||
Sbjct 5486 CTAAGTGGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545
Query 17997 CTTATGTCTATGTACAATATTCCGATTGAAAATGTTCGAACTCATCAATCCTGGTCAGGT 18056
|| ||| |||||||||||| ||| || ||||| || |||||||| ||| ||
Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605
Query 18057 AAATATTGTCCGCATAGAATGTTAGCTGAGGGAAGGTGG 18095
|| |||||||| ||| | |||||||| || ||| | |||
Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGTTGG 5644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119019558414510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |