Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_007734.1 Length=40867 Score E Sequences producing significant alignments: (Bits) Value seq2 464 2e-126 >seq2 Length=12201 Score = 464 bits (514), Expect = 2e-126 Identities = 473/603 (78%), Gaps = 14/603 (2%) Strand=Plus/Plus Query 15714 AAAGTGTGGATGGTGTAAAAACTACTGTAACAAATGTTCAAAATAGCCAAGCTGGATTTG 15773 |||||||||||||||||||| |||||||||| || || || ||| |||||| ||||||| Sbjct 1835 AAAGTGTGGATGGTGTAAAATCTACTGTAACTAAGGTGCAGGATAACCAAGCCGGATTTG 1894 Query 15774 AAAAGCGCATGTCTAATGTGGAACAAACAGCAACTGGATTATCTTCTACCGTAAGTAATT 15833 | ||||| | ||| ||| ||| || |||||| | || | || | || | Sbjct 1895 ATAAGCGTGTTGCTACTGTAGAAAAAGATGCAACT--ACCAT--TAAACAAAATGTCTCT 1950 Query 15834 T--AAACAATGTA-GTATCC-GATCAAGGAAAAAAGCTTACT-GAAGCAAATACAAAACT 15888 | | |||| || | | | || ||||||| | | |||| || || || | | Sbjct 1951 TTCATACAAAATACGCAGACAGAACAAGGAAGACAA-TTACAAGAGGCGAAAGCTGGATG 2009 Query 15889 CGAACAGCAAGCAACCGCGATTGGAGCAAAAGTTGAGCTTAAACAAGTAGAGGATTATGT 15948 ||| | || | || | || |||||||| ||||| |||||||| |||||||| Sbjct 2010 GGAAAATACTGCGAAAGCACTGCAAGGTAAAGTTGAACTTAAGCAAGTAGAAGATTATGT 2069 Query 15949 TGCTGGGTTTAAGATTCCTGAGTTGAAACAAACAGTTGATAAAAATAAACAAGATTTATT 16008 ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| || Sbjct 2070 TGCTGGGTTTAAGATACCTGAGTTGAAGCAAATAGTTGATAAAAATAAACAAGATTTGTT 2129 Query 16009 AGATGAATTAGCCAATAAGCTTGCAACTGAACAATTTAACCAGAAGATGACTCTGATTGA 16068 | ||| |||| ||||| |||||||| ||||||||||| ||||| |||||| |||| || Sbjct 2130 GGGAGAACTAGCTAATAAACTTGCAACGGAACAATTTAATCAGAAAATGACTATGATCGA 2189 Query 16069 TAACCGTTTCACTATTAATGAACAGGGTATCAATGCCGCAGCAAAAAAGACAGAAGTATA 16128 |||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 2190 CAACCGTTTCACTATCAATGAAGAGGGTATCAATGCCGCAGCAAAAAAGAAAGAAGTATA 2249 Query 16129 TACAA-AGACGCAAGCAGATGGACAATTTGCTACAGATTCTTATGTAAGAGATATGGAGT 16187 |||| ||| ||||||| ||||||||||||| | |||||||||||||||||||||||| Sbjct 2250 CACAATAGA-GCAAGCAAATGGACAATTTGCAAAAGATTCTTATGTAAGAGATATGGAAA 2308 Query 16188 CGCGCCTGCAGCTAACAGAAAAGGGTGTTAGCATATCTGTAAAAGAAAATGATGTAATCG 16247 | || || ||| |||| |||||||| ||||| ||||||||||||| || |||||||| | Sbjct 2309 CCCGTCTTCAGTTAACTGAAAAGGGCGTTAGTCTATCTGTAAAAGAGAACGATGTAATTG 2368 Query 16248 CAGCCATTAACATGAGTAAAGAAAACATTAAGTTAAATGCTGCAC-GAATAGATTTAGTT 16306 |||| |||| ||||| ||||||||||||| ||| ||||| | || |||| | ||||| Sbjct 2369 CAGCATTTAATATGAGCAAAGAAAACATTACGTTGAATGC-GAACAGAATTAACTTAGTA 2427 Query 16307 GGT 16309 ||| Sbjct 2428 GGT 2430 Score = 338 bits (374), Expect = 2e-88 Identities = 279/340 (82%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 14433 GAATCCTTAGTTCGCTTGGTAATAAACAAGAAATGATAGATCAGCTAGACAGATTAGTTC 14492 ||||||||||| | ||| | ||||||||||| | |||||| |||| | |||||| Sbjct 2 GAATCCTTAGTAAATTCGGTGAGAAACAAGAAATACTGGATCAGTTAGATAAATTAGTGA 61 Query 14493 AAGAAGCTAACGAAACCGCTAGTAATGCAAAGAAGGAGTCAGAAGCAGCAAAAACACTAG 14552 |||| || || ||||| |||||| |||| ||||| || || |||||||| |||||| | | Sbjct 62 AAGATGCAAATGAAACAGCTAGTGATGCTAAGAAAGAATCCGAAGCAGCGAAAACATTGG 121 Query 14553 CTGAAAAAGTACAAGAAAATATTAAAAATAATACCGTTGAAATTATAGAATCTAAGAATC 14612 |||||||||||||||| ||| |||||||||| || || || || || ||| | ||||||| Sbjct 122 CTGAAAAAGTACAAGAGAATCTTAAAAATAACACGGTAGACATCATTGAAGCAAAGAATC 181 Query 14613 CACCGACAACAGGTCTTAAACCATTTAAAACGCTTTGGCGTGATATTAGTATCGGAAAGC 14672 ||||||||||||| |||| ||| | ||| || ||||||||||||||||| | ||||||| Sbjct 182 CACCGACAACAGGGCTTAGACCTTATAAGACACTTTGGCGTGATATTAGCAATGGAAAGC 241 Query 14673 CTGGTATTTTAAAAATATGGACAGGTACAGCGTGGGAATCGGTTGTACCTGATGTTGAAT 14732 |||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||| | Sbjct 242 CTGGTATTTTGAAAATATGGACAGGCGCAGCTTGGGAATCGGTCGTACCTGATGTTGATT 301 Query 14733 CTGTaaaaaaaGAAACATTAGATCAGGTTAATAAAGATAT 14772 | || || |||||||| || || ||||| | |||||||| Sbjct 302 CAGTTAAGAAAGAAACGTTGGAACAGGTGACAAAAGATAT 341 Score = 306 bits (338), Expect = 1e-78 Identities = 343/459 (75%), Gaps = 0/459 (0%) Strand=Plus/Plus Query 17766 AAAAGGAGATGTTCAGTAATGGAAATCCaaaaaaaaTTAGTTGATCCAAGTAAGTATGGT 17825 ||||||||||||| | ||||||||||| |||||| ||||||||| |||| || |||||| Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245 Query 17826 ACAAAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATGAT 17885 || ||||| || ||||||||||| || ||| || ||||| ||||| || ||||| ||| Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305 Query 17886 GCTCCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTCAT 17945 ||| |||| | || |||||| ||| |||||| |||| |||| | || ||||||||| Sbjct 5306 GCTACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCAT 5365 Query 17946 ATTGCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGGCT 18005 ||||| ||||| || || |||| | ||||||||||| || || ||||| || ||| | Sbjct 5366 ATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCAT 5425 Query 18006 TGCGGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTATTCA 18065 ||||| || || ||| || |||||| |||| ||| || ||||||||||| || Sbjct 5426 TGCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCT 5485 Query 18066 AAATCAGGAGGAGATAGATACTATAAAGCTGAGGATAATGCTGTTGATGTTGTACGACAA 18125 | || |||||| |||| |||||||| ||||||||||| | | || ||| Sbjct 5486 CTAAGTGGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545 Query 18126 CTTATGTCTATGTACAATATTCCGATTGAAAATGTTCGAACTCATCAATCCTGGTCAGGT 18185 || ||| |||||||||||| ||| || ||||| || |||||||| ||| || Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605 Query 18186 AAATATTGTCCGCATAGAATGTTAGCTGAGGGAAGGTGG 18224 || |||||||| ||| | |||||||| || ||| | ||| Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGTTGG 5644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130577711957706