Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_007734.1
Length=40867
Score E
Sequences producing significant alignments: (Bits) Value
seq2 464 2e-126
>seq2
Length=12201
Score = 464 bits (514), Expect = 2e-126
Identities = 473/603 (78%), Gaps = 14/603 (2%)
Strand=Plus/Plus
Query 15714 AAAGTGTGGATGGTGTAAAAACTACTGTAACAAATGTTCAAAATAGCCAAGCTGGATTTG 15773
|||||||||||||||||||| |||||||||| || || || ||| |||||| |||||||
Sbjct 1835 AAAGTGTGGATGGTGTAAAATCTACTGTAACTAAGGTGCAGGATAACCAAGCCGGATTTG 1894
Query 15774 AAAAGCGCATGTCTAATGTGGAACAAACAGCAACTGGATTATCTTCTACCGTAAGTAATT 15833
| ||||| | ||| ||| ||| || |||||| | || | || | || |
Sbjct 1895 ATAAGCGTGTTGCTACTGTAGAAAAAGATGCAACT--ACCAT--TAAACAAAATGTCTCT 1950
Query 15834 T--AAACAATGTA-GTATCC-GATCAAGGAAAAAAGCTTACT-GAAGCAAATACAAAACT 15888
| | |||| || | | | || ||||||| | | |||| || || || | |
Sbjct 1951 TTCATACAAAATACGCAGACAGAACAAGGAAGACAA-TTACAAGAGGCGAAAGCTGGATG 2009
Query 15889 CGAACAGCAAGCAACCGCGATTGGAGCAAAAGTTGAGCTTAAACAAGTAGAGGATTATGT 15948
||| | || | || | || |||||||| ||||| |||||||| ||||||||
Sbjct 2010 GGAAAATACTGCGAAAGCACTGCAAGGTAAAGTTGAACTTAAGCAAGTAGAAGATTATGT 2069
Query 15949 TGCTGGGTTTAAGATTCCTGAGTTGAAACAAACAGTTGATAAAAATAAACAAGATTTATT 16008
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||
Sbjct 2070 TGCTGGGTTTAAGATACCTGAGTTGAAGCAAATAGTTGATAAAAATAAACAAGATTTGTT 2129
Query 16009 AGATGAATTAGCCAATAAGCTTGCAACTGAACAATTTAACCAGAAGATGACTCTGATTGA 16068
| ||| |||| ||||| |||||||| ||||||||||| ||||| |||||| |||| ||
Sbjct 2130 GGGAGAACTAGCTAATAAACTTGCAACGGAACAATTTAATCAGAAAATGACTATGATCGA 2189
Query 16069 TAACCGTTTCACTATTAATGAACAGGGTATCAATGCCGCAGCAAAAAAGACAGAAGTATA 16128
|||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 2190 CAACCGTTTCACTATCAATGAAGAGGGTATCAATGCCGCAGCAAAAAAGAAAGAAGTATA 2249
Query 16129 TACAA-AGACGCAAGCAGATGGACAATTTGCTACAGATTCTTATGTAAGAGATATGGAGT 16187
|||| ||| ||||||| ||||||||||||| | ||||||||||||||||||||||||
Sbjct 2250 CACAATAGA-GCAAGCAAATGGACAATTTGCAAAAGATTCTTATGTAAGAGATATGGAAA 2308
Query 16188 CGCGCCTGCAGCTAACAGAAAAGGGTGTTAGCATATCTGTAAAAGAAAATGATGTAATCG 16247
| || || ||| |||| |||||||| ||||| ||||||||||||| || |||||||| |
Sbjct 2309 CCCGTCTTCAGTTAACTGAAAAGGGCGTTAGTCTATCTGTAAAAGAGAACGATGTAATTG 2368
Query 16248 CAGCCATTAACATGAGTAAAGAAAACATTAAGTTAAATGCTGCAC-GAATAGATTTAGTT 16306
|||| |||| ||||| ||||||||||||| ||| ||||| | || |||| | |||||
Sbjct 2369 CAGCATTTAATATGAGCAAAGAAAACATTACGTTGAATGC-GAACAGAATTAACTTAGTA 2427
Query 16307 GGT 16309
|||
Sbjct 2428 GGT 2430
Score = 338 bits (374), Expect = 2e-88
Identities = 279/340 (82%), Gaps = 0/340 (0%)
Strand=Plus/Plus
Query 14433 GAATCCTTAGTTCGCTTGGTAATAAACAAGAAATGATAGATCAGCTAGACAGATTAGTTC 14492
||||||||||| | ||| | ||||||||||| | |||||| |||| | ||||||
Sbjct 2 GAATCCTTAGTAAATTCGGTGAGAAACAAGAAATACTGGATCAGTTAGATAAATTAGTGA 61
Query 14493 AAGAAGCTAACGAAACCGCTAGTAATGCAAAGAAGGAGTCAGAAGCAGCAAAAACACTAG 14552
|||| || || ||||| |||||| |||| ||||| || || |||||||| |||||| | |
Sbjct 62 AAGATGCAAATGAAACAGCTAGTGATGCTAAGAAAGAATCCGAAGCAGCGAAAACATTGG 121
Query 14553 CTGAAAAAGTACAAGAAAATATTAAAAATAATACCGTTGAAATTATAGAATCTAAGAATC 14612
|||||||||||||||| ||| |||||||||| || || || || || ||| | |||||||
Sbjct 122 CTGAAAAAGTACAAGAGAATCTTAAAAATAACACGGTAGACATCATTGAAGCAAAGAATC 181
Query 14613 CACCGACAACAGGTCTTAAACCATTTAAAACGCTTTGGCGTGATATTAGTATCGGAAAGC 14672
||||||||||||| |||| ||| | ||| || ||||||||||||||||| | |||||||
Sbjct 182 CACCGACAACAGGGCTTAGACCTTATAAGACACTTTGGCGTGATATTAGCAATGGAAAGC 241
Query 14673 CTGGTATTTTAAAAATATGGACAGGTACAGCGTGGGAATCGGTTGTACCTGATGTTGAAT 14732
|||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||| |
Sbjct 242 CTGGTATTTTGAAAATATGGACAGGCGCAGCTTGGGAATCGGTCGTACCTGATGTTGATT 301
Query 14733 CTGTaaaaaaaGAAACATTAGATCAGGTTAATAAAGATAT 14772
| || || |||||||| || || ||||| | ||||||||
Sbjct 302 CAGTTAAGAAAGAAACGTTGGAACAGGTGACAAAAGATAT 341
Score = 306 bits (338), Expect = 1e-78
Identities = 343/459 (75%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 17766 AAAAGGAGATGTTCAGTAATGGAAATCCaaaaaaaaTTAGTTGATCCAAGTAAGTATGGT 17825
||||||||||||| | ||||||||||| |||||| ||||||||| |||| || ||||||
Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245
Query 17826 ACAAAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATGAT 17885
|| ||||| || ||||||||||| || ||| || ||||| ||||| || ||||| |||
Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305
Query 17886 GCTCCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTCAT 17945
||| |||| | || |||||| ||| |||||| |||| |||| | || |||||||||
Sbjct 5306 GCTACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCAT 5365
Query 17946 ATTGCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGGCT 18005
||||| ||||| || || |||| | ||||||||||| || || ||||| || ||| |
Sbjct 5366 ATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCAT 5425
Query 18006 TGCGGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTATTCA 18065
||||| || || ||| || |||||| |||| ||| || ||||||||||| ||
Sbjct 5426 TGCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCT 5485
Query 18066 AAATCAGGAGGAGATAGATACTATAAAGCTGAGGATAATGCTGTTGATGTTGTACGACAA 18125
| || |||||| |||| |||||||| ||||||||||| | | || |||
Sbjct 5486 CTAAGTGGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545
Query 18126 CTTATGTCTATGTACAATATTCCGATTGAAAATGTTCGAACTCATCAATCCTGGTCAGGT 18185
|| ||| |||||||||||| ||| || ||||| || |||||||| ||| ||
Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605
Query 18186 AAATATTGTCCGCATAGAATGTTAGCTGAGGGAAGGTGG 18224
|| |||||||| ||| | |||||||| || ||| | |||
Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGTTGG 5644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130577711957706
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |