Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6888 102 7e-17 seq247 93.3 4e-14 seq9952 86.0 5e-12 >seq6888 Length=12617 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||| || ||||| || || || || || || || ||| | || || || | Sbjct 7438 ATGCAAATCTTCGTCAAGACTCTAACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTC- 7380 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||||| ||| | || |||| || ||| ||||| || ||| |||| ||| | Sbjct 7379 -CGACACTATTGATAATGTCAAACCCAAGATTCAGGATAAGGAGGGCATCCCGCCTGACC 7321 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| || || | ||||||||||||||||||||| | | ||| | ||||||| | Sbjct 7320 AGCAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTGCA 7261 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||| |||| ||||| || | ||| ||||| Sbjct 7260 ACATCTAAAAGGAGTCCACCTTGCATCTGGTG 7229 >seq247 Length=47399 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||| || || ||||| || ||||| || || || || ||| | || || || | Sbjct 33881 ATGCAGATATTCGTCAAGACTCTCACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCG 33822 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | |||| | | |||| || ||| || ||| || || || ||| |||| ||| Sbjct 33821 G--ACACCATCG-ACAACGTTAAAGCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGAC 33765 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||| || || | ||||||||||||||||||||| | | ||| | |||||||| Sbjct 33764 CAGCAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTAC 33705 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| ||||| ||||| || | ||| ||||| Sbjct 33704 AACATCCAAAAGGAGTCCACCTTGCATCTGGTG 33672 >seq9952 Length=36685 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || ||||| |||||||| || || || || || |||| ||| | Sbjct 3913 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACTCTCGAGGTTGAGAGTTCC 3854 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | || | || ||| || || || || |||||| |||| || ||| Sbjct 3853 GATACCATCGGCAACGTTAAAGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGAGCAG 3794 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| || || || | ||||||| | || |||| ||||| ||| Sbjct 3793 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGATTACAAC 3734 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || ||||| | ||| |||||||||||||| ||||||| Sbjct 3733 ATCCAGAAGGAATCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGG 3687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425093115759640