Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq6888 102 7e-17
seq247 93.3 4e-14
seq9952 86.0 5e-12
>seq6888
Length=12617
Score = 102 bits (112), Expect = 7e-17
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343
|||||||| || ||||| || || || || || || || ||| | || || || |
Sbjct 7438 ATGCAAATCTTCGTCAAGACTCTAACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTC- 7380
Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403
||||||| ||| | || |||| || ||| ||||| || ||| |||| ||| |
Sbjct 7379 -CGACACTATTGATAATGTCAAACCCAAGATTCAGGATAAGGAGGGCATCCCGCCTGACC 7321
Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463
||||||| || || | ||||||||||||||||||||| | | ||| | ||||||| |
Sbjct 7320 AGCAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTGCA 7261
Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495
|||| |||| ||||| || | ||| |||||
Sbjct 7260 ACATCTAAAAGGAGTCCACCTTGCATCTGGTG 7229
>seq247
Length=47399
Score = 93.3 bits (102), Expect = 4e-14
Identities = 151/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343
||||| || || ||||| || ||||| || || || || ||| | || || || |
Sbjct 33881 ATGCAGATATTCGTCAAGACTCTCACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCG 33822
Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402
| |||| | | |||| || ||| || ||| || || || ||| |||| |||
Sbjct 33821 G--ACACCATCG-ACAACGTTAAAGCTAAGATTCAGGACAAGGAGGGCATCCCGCCTGAC 33765
Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462
|||||||| || || | ||||||||||||||||||||| | | ||| | ||||||||
Sbjct 33764 CAGCAAAGGCTCATCTTTGCGGGCAAACAATTAGAAGACGGCCGTACCCTTGCCGATTAC 33705
Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTG 115495
||||| ||||| ||||| || | ||| |||||
Sbjct 33704 AACATCCAAAAGGAGTCCACCTTGCATCTGGTG 33672
>seq9952
Length=36685
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || || ||||| |||||||| || || || || || |||| ||| |
Sbjct 3913 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACTCTCGAGGTTGAGAGTTCC 3854
Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405
|| || | || | || ||| || || || || |||||| |||| || |||
Sbjct 3853 GATACCATCGGCAACGTTAAAGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGAGCAG 3794
Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465
|| || || || | ||| || || || | ||||||| | || |||| ||||| |||
Sbjct 3793 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGATTACAAC 3734
Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
|| || || || ||||| | ||| |||||||||||||| |||||||
Sbjct 3733 ATCCAGAAGGAATCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGG 3687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425093115759640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |