Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_007814.1 Length=37974 Score E Sequences producing significant alignments: (Bits) Value seq2 706 0.0 >seq2 Length=12201 Score = 706 bits (782), Expect = 0.0 Identities = 537/629 (85%), Gaps = 4/629 (1%) Strand=Plus/Plus Query 15545 GAATTCACCAAGAAAACCATTGAAATTACAA-AAAGTGTAGATGGTATCAAAGAAACGAT 15603 || |||| |||| ||| |||| ||| | ||||||| |||||| | ||| || | Sbjct 1804 GACTTCAGCAAGTCAACATATGAA-TTAGAGCAAAGTGTGGATGGTGTAAAATCTACTGT 1862 Query 15604 AACAAAAGTAGAAAATAATCAAAGTGGATTTGATAAGCGTGTTGCTACTGTAGAAAAAGA 15663 ||| || || | |||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1863 AACTAAGGTGCAGGATAACCAAGCCGGATTTGATAAGCGTGTTGCTACTGTAGAAAAAGA 1922 Query 15664 TGCAACTGCCATTAAACAAAATGTCTCTTTAATACAAAATACGCAGACAGAACAAGGAAG 15723 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1923 TGCAACTACCATTAAACAAAATGTCTCTTTCATACAAAATACGCAGACAGAACAAGGAAG 1982 Query 15724 GCAATTACAAGAGGCAAAAGCTGGATGGGAAAATACTGCAAAAGCACTTGAAGGTAAAGT 15783 |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1983 ACAATTACAAGAGGCGAAAGCTGGATGGGAAAATACTGCGAAAGCACTGCAAGGTAAAGT 2042 Query 15784 TGAGCTTAAACAAGTAGAGGATTATGTTGCGGGGTTTAAGATTCCAGAGTTGAAGCAAAC 15843 ||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||| Sbjct 2043 TGAACTTAAGCAAGTAGAAGATTATGTTGCTGGGTTTAAGATACCTGAGTTGAAGCAAAT 2102 Query 15844 AGTTAATCAGAATAAACAAGATTTATTAGATGAATTAGCCAATAAGCTTGCAACTGAGCA 15903 |||| || | |||||||||||||| || | ||| |||| ||||| |||||||| || || Sbjct 2103 AGTTGATAAAAATAAACAAGATTTGTTGGGAGAACTAGCTAATAAACTTGCAACGGAACA 2162 Query 15904 ATTTAATCAGAAAATGACTCTGATTGATAATCGTTTTACTATTAATGAACAGGGTATCAA 15963 ||||||||||||||||||| |||| || || ||||| ||||| |||||| |||||||||| Sbjct 2163 ATTTAATCAGAAAATGACTATGATCGACAACCGTTTCACTATCAATGAAGAGGGTATCAA 2222 Query 15964 TGCAGCAGCAAAAAAGACAGAAGTATATACGAAAACGCAAGCAGATGGACAATTCGCTAC 16023 ||| ||||||||||||| ||||||||| || | | ||||||| |||||||||| || | Sbjct 2223 TGCCGCAGCAAAAAAGAAAGAAGTATACACAATAGAGCAAGCAAATGGACAATTTGCAAA 2282 Query 16024 AGGTTCTTATGTAAGAGATATGGAAACTCGTCTTCAGTTAACTGAAAAGGGCGTTAGTAT 16083 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 2283 AGATTCTTATGTAAGAGATATGGAAACCCGTCTTCAGTTAACTGAAAAGGGCGTTAGTCT 2342 Query 16084 ATCTGTAAAAGAAAATGATGTAATAGCAGCCATTAACATGAGTAAAGAAAACATTAAGTT 16143 |||||||||||| || |||||||| ||||| |||| ||||| ||||||||||||| ||| Sbjct 2343 ATCTGTAAAAGAGAACGATGTAATTGCAGCATTTAATATGAGCAAAGAAAACATTACGTT 2402 Query 16144 AAATGCTGCAC-GAATAGATTTAGTTGGT 16171 ||||| | || |||| | ||||| ||| Sbjct 2403 GAATGC-GAACAGAATTAACTTAGTAGGT 2430 Score = 325 bits (360), Expect = 1e-84 Identities = 263/318 (83%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 14447 AAACAAGAAATGATAGACCAGCTAGATAAACTAGTGAACGAAGCTAACGAAACCGCTAGT 14506 ||||||||||| | || ||| |||||||| ||||||| || || || ||||| |||||| Sbjct 25 AAACAAGAAATACTGGATCAGTTAGATAAATTAGTGAAAGATGCAAATGAAACAGCTAGT 84 Query 14507 AATGCAAAGAAGGAGTCAGAAGCAGCAAAAGCACTAGCTGAAAAAGTACAAGAGAATATT 14566 |||| ||||| || || |||||||| ||| || | ||||||||||||||||||||| || Sbjct 85 GATGCTAAGAAAGAATCCGAAGCAGCGAAAACATTGGCTGAAAAAGTACAAGAGAATCTT 144 Query 14567 AAAAATAATACCGTTGAAATTATAGAATCCAAGAATCCACCGACAACAGGACTGAAACCT 14626 |||||||| || || || || || ||| | |||||||||||||||||||| || | |||| Sbjct 145 AAAAATAACACGGTAGACATCATTGAAGCAAAGAATCCACCGACAACAGGGCTTAGACCT 204 Query 14627 TTTAAAACGCTTTGGCGTGATATTAGTAACGGAAAGCCCGGTATTTTAAAAATATGGACA 14686 | ||| || ||||||||||||||||| || |||||||| |||||||| |||||||||||| Sbjct 205 TATAAGACACTTTGGCGTGATATTAGCAATGGAAAGCCTGGTATTTTGAAAATATGGACA 264 Query 14687 GGTACAGCGTGGGAATCAGTTGTACCCGATGTTGAATCTGTaaaaaaaGAAACATTAGAT 14746 || |||| |||||||| || ||||| |||||||| || || || |||||||| || || Sbjct 265 GGCGCAGCTTGGGAATCGGTCGTACCTGATGTTGATTCAGTTAAGAAAGAAACGTTGGAA 324 Query 14747 CAGGTTAATAAAGATATT 14764 ||||| | ||||||||| Sbjct 325 CAGGTGACAAAAGATATT 342 Score = 306 bits (338), Expect = 9e-79 Identities = 343/459 (75%), Gaps = 0/459 (0%) Strand=Plus/Plus Query 17628 AAAAGGAGATGTTCAGTAATGGAAATCCaaaaaaaaTTAGTTGATCCAAGTAAGTATGGT 17687 ||||||||||||| | ||||||||||| |||||| ||||||||| |||| || |||||| Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245 Query 17688 ACAAAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATGAT 17747 || ||||| || ||||||||||| || ||| || ||||| ||||| || ||||| ||| Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305 Query 17748 GCTCCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTCAT 17807 ||| |||| | || |||||| ||| |||||| |||| |||| | || ||||||||| Sbjct 5306 GCTACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCAT 5365 Query 17808 ATTGCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGGCT 17867 ||||| ||||| || || |||| | ||||||||||| || || ||||| || ||| | Sbjct 5366 ATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCAT 5425 Query 17868 TGCGGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTATTCA 17927 ||||| || || ||| || |||||| |||| ||| || ||||||||||| || Sbjct 5426 TGCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCT 5485 Query 17928 AAATCAGGAGGAGATAGATACTATAAAGCTGAGGATAATGCTGTTGATGTTGTACGACAA 17987 | || |||||| |||| |||||||| ||||||||||| | | || ||| Sbjct 5486 CTAAGTGGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545 Query 17988 CTTATGTCTATGTACAATATTCCGATTGAAAATGTTCGAACTCATCAATCCTGGTCAGGT 18047 || ||| |||||||||||| ||| || ||||| || |||||||| ||| || Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605 Query 18048 AAATATTGTCCGCATAGAATGTTAGCTGAGGGAAGGTGG 18086 || |||||||| ||| | |||||||| || ||| | ||| Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGTTGG 5644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121325432433504