Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_007814.1
Length=37974
Score E
Sequences producing significant alignments: (Bits) Value
seq2 706 0.0
>seq2
Length=12201
Score = 706 bits (782), Expect = 0.0
Identities = 537/629 (85%), Gaps = 4/629 (1%)
Strand=Plus/Plus
Query 15545 GAATTCACCAAGAAAACCATTGAAATTACAA-AAAGTGTAGATGGTATCAAAGAAACGAT 15603
|| |||| |||| ||| |||| ||| | ||||||| |||||| | ||| || |
Sbjct 1804 GACTTCAGCAAGTCAACATATGAA-TTAGAGCAAAGTGTGGATGGTGTAAAATCTACTGT 1862
Query 15604 AACAAAAGTAGAAAATAATCAAAGTGGATTTGATAAGCGTGTTGCTACTGTAGAAAAAGA 15663
||| || || | |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1863 AACTAAGGTGCAGGATAACCAAGCCGGATTTGATAAGCGTGTTGCTACTGTAGAAAAAGA 1922
Query 15664 TGCAACTGCCATTAAACAAAATGTCTCTTTAATACAAAATACGCAGACAGAACAAGGAAG 15723
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1923 TGCAACTACCATTAAACAAAATGTCTCTTTCATACAAAATACGCAGACAGAACAAGGAAG 1982
Query 15724 GCAATTACAAGAGGCAAAAGCTGGATGGGAAAATACTGCAAAAGCACTTGAAGGTAAAGT 15783
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1983 ACAATTACAAGAGGCGAAAGCTGGATGGGAAAATACTGCGAAAGCACTGCAAGGTAAAGT 2042
Query 15784 TGAGCTTAAACAAGTAGAGGATTATGTTGCGGGGTTTAAGATTCCAGAGTTGAAGCAAAC 15843
||| ||||| |||||||| ||||||||||| ||||||||||| || |||||||||||||
Sbjct 2043 TGAACTTAAGCAAGTAGAAGATTATGTTGCTGGGTTTAAGATACCTGAGTTGAAGCAAAT 2102
Query 15844 AGTTAATCAGAATAAACAAGATTTATTAGATGAATTAGCCAATAAGCTTGCAACTGAGCA 15903
|||| || | |||||||||||||| || | ||| |||| ||||| |||||||| || ||
Sbjct 2103 AGTTGATAAAAATAAACAAGATTTGTTGGGAGAACTAGCTAATAAACTTGCAACGGAACA 2162
Query 15904 ATTTAATCAGAAAATGACTCTGATTGATAATCGTTTTACTATTAATGAACAGGGTATCAA 15963
||||||||||||||||||| |||| || || ||||| ||||| |||||| ||||||||||
Sbjct 2163 ATTTAATCAGAAAATGACTATGATCGACAACCGTTTCACTATCAATGAAGAGGGTATCAA 2222
Query 15964 TGCAGCAGCAAAAAAGACAGAAGTATATACGAAAACGCAAGCAGATGGACAATTCGCTAC 16023
||| ||||||||||||| ||||||||| || | | ||||||| |||||||||| || |
Sbjct 2223 TGCCGCAGCAAAAAAGAAAGAAGTATACACAATAGAGCAAGCAAATGGACAATTTGCAAA 2282
Query 16024 AGGTTCTTATGTAAGAGATATGGAAACTCGTCTTCAGTTAACTGAAAAGGGCGTTAGTAT 16083
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 2283 AGATTCTTATGTAAGAGATATGGAAACCCGTCTTCAGTTAACTGAAAAGGGCGTTAGTCT 2342
Query 16084 ATCTGTAAAAGAAAATGATGTAATAGCAGCCATTAACATGAGTAAAGAAAACATTAAGTT 16143
|||||||||||| || |||||||| ||||| |||| ||||| ||||||||||||| |||
Sbjct 2343 ATCTGTAAAAGAGAACGATGTAATTGCAGCATTTAATATGAGCAAAGAAAACATTACGTT 2402
Query 16144 AAATGCTGCAC-GAATAGATTTAGTTGGT 16171
||||| | || |||| | ||||| |||
Sbjct 2403 GAATGC-GAACAGAATTAACTTAGTAGGT 2430
Score = 325 bits (360), Expect = 1e-84
Identities = 263/318 (83%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 14447 AAACAAGAAATGATAGACCAGCTAGATAAACTAGTGAACGAAGCTAACGAAACCGCTAGT 14506
||||||||||| | || ||| |||||||| ||||||| || || || ||||| ||||||
Sbjct 25 AAACAAGAAATACTGGATCAGTTAGATAAATTAGTGAAAGATGCAAATGAAACAGCTAGT 84
Query 14507 AATGCAAAGAAGGAGTCAGAAGCAGCAAAAGCACTAGCTGAAAAAGTACAAGAGAATATT 14566
|||| ||||| || || |||||||| ||| || | ||||||||||||||||||||| ||
Sbjct 85 GATGCTAAGAAAGAATCCGAAGCAGCGAAAACATTGGCTGAAAAAGTACAAGAGAATCTT 144
Query 14567 AAAAATAATACCGTTGAAATTATAGAATCCAAGAATCCACCGACAACAGGACTGAAACCT 14626
|||||||| || || || || || ||| | |||||||||||||||||||| || | ||||
Sbjct 145 AAAAATAACACGGTAGACATCATTGAAGCAAAGAATCCACCGACAACAGGGCTTAGACCT 204
Query 14627 TTTAAAACGCTTTGGCGTGATATTAGTAACGGAAAGCCCGGTATTTTAAAAATATGGACA 14686
| ||| || ||||||||||||||||| || |||||||| |||||||| ||||||||||||
Sbjct 205 TATAAGACACTTTGGCGTGATATTAGCAATGGAAAGCCTGGTATTTTGAAAATATGGACA 264
Query 14687 GGTACAGCGTGGGAATCAGTTGTACCCGATGTTGAATCTGTaaaaaaaGAAACATTAGAT 14746
|| |||| |||||||| || ||||| |||||||| || || || |||||||| || ||
Sbjct 265 GGCGCAGCTTGGGAATCGGTCGTACCTGATGTTGATTCAGTTAAGAAAGAAACGTTGGAA 324
Query 14747 CAGGTTAATAAAGATATT 14764
||||| | |||||||||
Sbjct 325 CAGGTGACAAAAGATATT 342
Score = 306 bits (338), Expect = 9e-79
Identities = 343/459 (75%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 17628 AAAAGGAGATGTTCAGTAATGGAAATCCaaaaaaaaTTAGTTGATCCAAGTAAGTATGGT 17687
||||||||||||| | ||||||||||| |||||| ||||||||| |||| || ||||||
Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245
Query 17688 ACAAAGTGTCCGTATACAATGAAGCCTAAATATATCACTGTTCACAACACATATAATGAT 17747
|| ||||| || ||||||||||| || ||| || ||||| ||||| || ||||| |||
Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305
Query 17748 GCTCCAGCTGAAAATGAAGTGAGTTACATGATTAGTAACAATAATGAGGTGTCGTTTCAT 17807
||| |||| | || |||||| ||| |||||| |||| |||| | || |||||||||
Sbjct 5306 GCTACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCAT 5365
Query 17808 ATTGCAGTAGATGACAAGAAAGCGATTCAAGGTATTCCGTTGGAACGTAATGCATGGGCT 17867
||||| ||||| || || |||| | ||||||||||| || || ||||| || ||| |
Sbjct 5366 ATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCAT 5425
Query 17868 TGCGGAGACGGCAATGGTTCGGGGAATCGTCAATCCATTTCTGTAGAAATCTGTTATTCA 17927
||||| || || ||| || |||||| |||| ||| || ||||||||||| ||
Sbjct 5426 TGCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCT 5485
Query 17928 AAATCAGGAGGAGATAGATACTATAAAGCTGAGGATAATGCTGTTGATGTTGTACGACAA 17987
| || |||||| |||| |||||||| ||||||||||| | | || |||
Sbjct 5486 CTAAGTGGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545
Query 17988 CTTATGTCTATGTACAATATTCCGATTGAAAATGTTCGAACTCATCAATCCTGGTCAGGT 18047
|| ||| |||||||||||| ||| || ||||| || |||||||| ||| ||
Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605
Query 18048 AAATATTGTCCGCATAGAATGTTAGCTGAGGGAAGGTGG 18086
|| |||||||| ||| | |||||||| || ||| | |||
Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGTTGG 5644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 121325432433504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |