Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq19144 98.7 1e-15 seq2295 89.7 7e-13 >seq19144 Length=21831 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| |||||||| | ||| |||||||| |||||||||||| || || | | | | Sbjct 17921 GTTCCAGCATTAAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTGTGACATGAAGTGG 17862 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | ||||||||| || || || | ||| || || || || | || | ||||| Sbjct 17861 TATGTTTTAATAGCTGAATCAATGTCATCCTTG-TGGATCCCGACAGAAACCCTCATTAG 17803 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||| ||||| || | ||| | | ||||||| ||| || | || | Sbjct 17802 CATGTGTTGAGGCCTTTCTACAACCTTTCCCTGGACCTTCAACAGGTATGACCTCTCTAG 17743 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || ||||| |||||||| | || |||||| || || || || || Sbjct 17742 GGTCTTAAATCCAAAATAATCATAATCAAAGTCCCGGTCATAGATGAT 17695 >seq2295 Length=9791 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| |||||||| |||||||||||| || ||| | | | | Sbjct 7825 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTGAGACATGAAGTGG 7884 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | |||||| || || || || | ||| || ||||| || | || | ||||| Sbjct 7885 TATGTTTTAATAGCCGAATCAATGTCATCCTTG-TGGATTCCAACAGAAACCCTCATTAG 7943 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||| ||||| || | ||| | | || || | ||| || | |||| Sbjct 7944 CATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTTAATAGGTATGACCTCTCCAG 8003 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || || || |||||||| | || |||||| || || || || || Sbjct 8004 GGTCTTGAATCCAAAATAATCATAATCAAAGTCACGGTCATAGATTAT 8051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633248676401200