Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq19144 98.7 1e-15
seq2295 89.7 7e-13
>seq19144
Length=21831
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
||||| |||||||| | ||| |||||||| |||||||||||| || || | | | |
Sbjct 17921 GTTCCAGCATTAAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTGTGACATGAAGTGG 17862
Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | ||||||||| || || || | ||| || || || || | || | |||||
Sbjct 17861 TATGTTTTAATAGCTGAATCAATGTCATCCTTG-TGGATCCCGACAGAAACCCTCATTAG 17803
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||| ||||| ||||| || | ||| | | ||||||| ||| || | || |
Sbjct 17802 CATGTGTTGAGGCCTTTCTACAACCTTTCCCTGGACCTTCAACAGGTATGACCTCTCTAG 17743
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
|| ||||| |||||||| | || |||||| || || || || ||
Sbjct 17742 GGTCTTAAATCCAAAATAATCATAATCAAAGTCCCGGTCATAGATGAT 17695
>seq2295
Length=9791
Score = 89.7 bits (98), Expect = 7e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
||||| ||||| || | ||| |||||||| |||||||||||| || ||| | | | |
Sbjct 7825 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTGAGACATGAAGTGG 7884
Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585
|| || | |||||| || || || || | ||| || ||||| || | || | |||||
Sbjct 7885 TATGTTTTAATAGCCGAATCAATGTCATCCTTG-TGGATTCCAACAGAAACCCTCATTAG 7943
Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645
|||||| ||||| ||||| || | ||| | | || || | ||| || | ||||
Sbjct 7944 CATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTTAATAGGTATGACCTCTCCAG 8003
Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
|| || || |||||||| | || |||||| || || || || ||
Sbjct 8004 GGTCTTGAATCCAAAATAATCATAATCAAAGTCACGGTCATAGATTAT 8051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633248676401200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |