Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq11744 95.1 1e-14 seq11508 93.3 5e-14 seq5522 87.8 2e-12 seq16627 86.0 7e-12 seq7766 86.0 7e-12 seq23684 84.2 2e-11 seq3012 84.2 2e-11 seq20885 82.4 8e-11 seq15637 82.4 8e-11 seq12374 82.4 8e-11 seq11484 82.4 8e-11 seq9951 82.4 8e-11 seq6819 82.4 8e-11 seq5276 82.4 8e-11 >seq11744 Length=111123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/108 (81%), Gaps = 9/108 (8%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GG 126318 ||||||||| ||||||||||||||||||||||||| | ||| |||||| |||| || Sbjct 29973 ACAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGG 30030 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 | |||||||||| || ||||| ||||||| || || || |||||| Sbjct 30031 GGGCGTGGGTTCAAATCCCACTTCTGACAATTTGTTTTT---ATTTTT 30075 >seq11508 Length=10733 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/94 (83%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 6945 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 7004 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||| ||||||||| Sbjct 7005 TGGGTTCAAATCCCACTTCTGAC--ATTATTATT 7036 >seq5522 Length=24291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 85/107 (79%), Gaps = 8/107 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGG 126319 |||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 22949 CAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAG 22892 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| || ||||| ||||| ||| || || ||||||| Sbjct 22891 GGCGTGGGTTCAAATCCCACTTCTGAC--ATTTTTTTTCTAATTTTT 22847 >seq16627 Length=30151 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/98 (81%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 7069 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 7126 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| || || |||||| ||||| Sbjct 7127 TTCAAATCCCACAGCTGTCATTTTTTTATTG--ATTTT 7162 >seq7766 Length=24128 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 6066 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 6007 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 6006 TGGGTTCAAATCCCACTTCTGACA 5983 >seq23684 Length=24796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/112 (79%), Gaps = 8/112 (7%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 || |||||| ||||||||||||||||||||||||| |||| ||| || ||||| || Sbjct 6977 ACTGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTTAA-TTCTCGT--CCTCGAGAGA 6921 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 || ||||| | || ||||| |||||||| | | ||||||| ||||||| Sbjct 6920 GGGCATGGGTGCAAATCCCACTTCTGACAAAAAAAT-TTGGAATGTTTGTTG 6870 >seq3012 Length=48164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 47192 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 47249 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| || ||| || Sbjct 47250 GGGTTCAAATCCCACAGCTGTCATATTTTT 47279 >seq20885 Length=38732 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 8790 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 8731 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||||| || || || Sbjct 8730 TGGGTTCAAATCCCACTTCTGACAATTTGTTTTT 8697 >seq15637 Length=24450 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 13619 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 13562 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 13561 GCGTGGGTTCAAATCCCACTTCTGACA 13535 >seq12374 Length=51188 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 24858 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 24801 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 24800 GCGTGGGTTCAAATCCCACTTCTGACA 24774 >seq11484 Length=18187 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 9452 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 9395 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 9394 TTCAAATCCCACAGCTGTCAGATTTTT 9368 >seq9951 Length=73328 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 50651 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 50708 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| || ||| Sbjct 50709 TTCAAATCCCACAGCTGTCAGATT 50732 >seq6819 Length=31416 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | Sbjct 20353 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 20412 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 20413 GCGTGGGTTCAAATCCCACTTCTGACA 20439 >seq5276 Length=17988 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 14484 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 14541 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 14542 GCGTGGGTTCAAATCCCACTTCTGACA 14568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556523920098280