Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq11744 95.1 1e-14
seq11508 93.3 5e-14
seq5522 87.8 2e-12
seq16627 86.0 7e-12
seq7766 86.0 7e-12
seq23684 84.2 2e-11
seq3012 84.2 2e-11
seq20885 82.4 8e-11
seq15637 82.4 8e-11
seq12374 82.4 8e-11
seq11484 82.4 8e-11
seq9951 82.4 8e-11
seq6819 82.4 8e-11
seq5276 82.4 8e-11
>seq11744
Length=111123
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/108 (81%), Gaps = 9/108 (8%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GG 126318
||||||||| ||||||||||||||||||||||||| | ||| |||||| |||| ||
Sbjct 29973 ACAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGG 30030
Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
| |||||||||| || ||||| ||||||| || || || ||||||
Sbjct 30031 GGGCGTGGGTTCAAATCCCACTTCTGACAATTTGTTTTT---ATTTTT 30075
>seq11508
Length=10733
Score = 93.3 bits (102), Expect = 5e-14
Identities = 78/94 (83%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 6945 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 7004
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||| || ||||| ||||| |||||||||
Sbjct 7005 TGGGTTCAAATCCCACTTCTGAC--ATTATTATT 7036
>seq5522
Length=24291
Score = 87.8 bits (96), Expect = 2e-12
Identities = 85/107 (79%), Gaps = 8/107 (7%)
Strand=Plus/Minus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGG 126319
|||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 22949 CAGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAG 22892
Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
|||||||||| || ||||| ||||| ||| || || |||||||
Sbjct 22891 GGCGTGGGTTCAAATCCCACTTCTGAC--ATTTTTTTTCTAATTTTT 22847
>seq16627
Length=30151
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/98 (81%), Gaps = 4/98 (4%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 7069 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 7126
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
||| || |||||| ||| || || |||||| |||||
Sbjct 7127 TTCAAATCCCACAGCTGTCATTTTTTTATTG--ATTTT 7162
>seq7766
Length=24128
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 6066 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 6007
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| || ||||| ||||||
Sbjct 6006 TGGGTTCAAATCCCACTTCTGACA 5983
>seq23684
Length=24796
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/112 (79%), Gaps = 8/112 (7%)
Strand=Plus/Minus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320
|| |||||| ||||||||||||||||||||||||| |||| ||| || ||||| ||
Sbjct 6977 ACTGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTTAA-TTCTCGT--CCTCGAGAGA 6921
Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370
|| ||||| | || ||||| |||||||| | | ||||||| |||||||
Sbjct 6920 GGGCATGGGTGCAAATCCCACTTCTGACAAAAAAAT-TTGGAATGTTTGTTG 6870
>seq3012
Length=48164
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 47192 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 47249
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| || ||| ||
Sbjct 47250 GGGTTCAAATCCCACAGCTGTCATATTTTT 47279
>seq20885
Length=38732
Score = 82.4 bits (90), Expect = 8e-11
Identities = 75/94 (80%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |||
Sbjct 8790 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 8731
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||| || ||||| ||||||| || || ||
Sbjct 8730 TGGGTTCAAATCCCACTTCTGACAATTTGTTTTT 8697
>seq15637
Length=24450
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 13619 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 13562
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 13561 GCGTGGGTTCAAATCCCACTTCTGACA 13535
>seq12374
Length=51188
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 24858 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 24801
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 24800 GCGTGGGTTCAAATCCCACTTCTGACA 24774
>seq11484
Length=18187
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 9452 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 9395
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| || ||| ||
Sbjct 9394 TTCAAATCCCACAGCTGTCAGATTTTT 9368
>seq9951
Length=73328
Score = 82.4 bits (90), Expect = 8e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 50651 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 50708
Query 126328 TTCGAACCCCACACCTGACAAATT 126351
||| || |||||| ||| || |||
Sbjct 50709 TTCAAATCCCACAGCTGTCAGATT 50732
>seq6819
Length=31416
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320
||||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | |
Sbjct 20353 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGG 20412
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 20413 GCGTGGGTTCAAATCCCACTTCTGACA 20439
>seq5276
Length=17988
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 14484 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 14541
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 14542 GCGTGGGTTCAAATCCCACTTCTGACA 14568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556523920098280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |