Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq45547 96.9 2e-15 seq25669 89.7 4e-13 seq247 84.2 2e-11 >seq45547 Length=474 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || || || || || || ||||| |||| | | Sbjct 439 AATGCAAATCTTTGTAAAGACTTTCACTGGAAAGACTATCACTCTGGAAGTGGAAAGCTC 380 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| |||||||| || || ||||| || ||| |||| Sbjct 379 CGACACCCTTGATAATATGAAGGAAAAAATTCAGGACAAGGAGGGGGTCCCTCCGGACCA 320 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || || || ||||| || || || || |||||| | ||| | | |||||||| Sbjct 319 GCAAAGGCTGATATTTGCAGGGAAGCAGCTTGAAGATGGCAGGACTCTTGTTGATTACAA 260 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||||||| |||| | ||| | || || || Sbjct 259 CATACAGAAGGAATCCACTCTTCATTTGGTCCTTCGTCTGCGTGGTGG 212 >seq25669 Length=30460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| || ||| | ||| |||| ||||| |||||||| || ||||| || |||||| Sbjct 1170 GATAAGGAAGGTATTCCTCCGGACCAGCAGAGGCTTATCTTCGCCGGCAAGCAGCTAGAA 1111 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | || | || |||||||||||||||||||| || || || || |||| | Sbjct 1110 GATGGACGTACGCTTGCGGATTACAATATTCAGAAGGAGTCGACGCTCCACCTGGTCCTG 1051 Query 22047 CGTTTACGAGGAGG 22060 ||| | |||||||| Sbjct 1050 CGTCTCCGAGGAGG 1037 >seq247 Length=47399 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || || || ||||| || ||||| ||| | | Sbjct 33654 AATGCAAATCTTTGTAAAAACTCTCACTGGAAAGACCATCACTCTGGAAGTAGAAAGCTC 33595 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | ||| ||||||| || || ||||| | ||| |||| Sbjct 33594 CGACACCATTGATAACGTGAAGGCAAAAATTCAGGACAAGGAGGGAATCCCTCCGGACCA 33535 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || || |||||||||||||| ||||| |||||| || | || || || || Sbjct 33534 GCAAAGGCTGATCTTTGCTGGCAAGCAACTTGAAGATGGTCGGACCCTTGCAGACTATAA 33475 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| || ||||| || ||||| ||| |||| | ||| |||| || ||| Sbjct 33474 TATCCAAAAGGAGTCGACTCTCCATTTGGTTCTCCGTCTACGGGGTGGA 33426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357913564227538