Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq9418 118 9e-22
seq26443 109 5e-19
seq9952 107 2e-18
seq247 104 2e-17
seq37694 100 2e-16
seq25669 100 2e-16
seq45547 91.5 1e-13
seq36798 91.5 1e-13
seq31682 82.4 6e-11
>seq9418
Length=21897
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | || || | || | || ||||| || |||||||||||||||
Sbjct 11325 ATACCACCACGCAGACGCAGGACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCG 11266
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| |||||| ||||| || || || || ||| |||| || | ||| |||||||||
Sbjct 11265 GCCAAAGTACGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGA 11206
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| ||| | | || | ||||||| || ||
Sbjct 11205 GGGATTCCTTCCTTGTCCTGGATCTTAGCTTTCACGTTGTCGATGGTGTCGCTGCTCTCC 11146
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || ||||| |||| || || ||||| ||||||||
Sbjct 11145 ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 11096
>seq26443
Length=10536
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || || | || | ||| | ||||| || || |||||||||||||||
Sbjct 9046 ATACCTCCCCTCAGCCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCG 9105
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||||| ||||| || || ||||||||| |||| | | ||| ||||||||
Sbjct 9106 GCCAAGGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGG 9165
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| |||||| || | | || | |||||| || ||
Sbjct 9166 GGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCACTGCTCTCC 9225
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || |||||||||||||| || ||||| || |||||
Sbjct 9226 ACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAAGATTTGCAT 9275
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || || | ||| | ||| | || || || || || ||||||||||||
Sbjct 9274 ATACCACCCCTCAGCCTGAGAACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCG 9333
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || || || || || || || ||| |||| || | ||| ||||||||
Sbjct 9334 GCCAAGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGG 9393
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| ||| | | || | ||||||| || ||
Sbjct 9394 GGGATCCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTCGCTGCTCTCC 9453
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || |||||||| || || ||||| ||||||||
Sbjct 9454 ACCTCCAAAGTGATTGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 9503
>seq9952
Length=36685
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
|| ||||| || || ||||||||||| ||| | |||||| || ||||| || || ||
Sbjct 3945 GTCGATTCCTTCTGGATGTTGTAATCAGCT-AGAGTACGGCCGTCCTCAAGCTGCTTTCC 4003
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| ||||||| | ||| ||||||||||| |||||||| ||||| ||||| ||
Sbjct 4004 GGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 4063
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | || | |||||| | | ||||| || | ||| | || |||||||| || ||
Sbjct 4064 GACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTAAGGGT 4123
Query 114365 TTTTACAAAAATCTGCAT 114382
||| || || ||||||||
Sbjct 4124 TTTGACGAAGATCTGCAT 4141
Score = 104 bits (114), Expect = 2e-17
Identities = 156/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226
|||||| || | ||| | ||||||||| || || ||||||||||| || ||| ||
Sbjct 3698 TCTCAACACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAATCAGCCAGAGTGCGGCC 3757
Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286
|||||| || || || || || ||||||| | ||| || |||||||| |||||||| ||
Sbjct 3758 ATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGCTCCGGAGGGATGCCTTCCTT 3817
Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTT--CAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344
||| ||| || | |||| | ||| | | ||| |||| || || || | ||
Sbjct 3818 GTCCTGTATC-TTGGCTTTAAC-GTTGCCGATGGTATCGGAACTCTCAACCTCGAGAGTG 3875
Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| ||| |||||||| || || || || || ||||||||
Sbjct 3876 ATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 3913
>seq247
Length=47399
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || || ||||| | | ||| ||||| | || || || ||||| || || || ||
Sbjct 33424 ATTCCACCCCGTAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCT 33483
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || ||| |||||||||||| || ||||| |||| || | || |||||||||
Sbjct 33484 GCAAGGGTCCGACCATCTTCAAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGA 33543
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||| ||| || | | |||| |||||||| | |||
Sbjct 33544 GGGATTCCCTCCTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCT 33603
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || |||||||||||||| || |||||
Sbjct 33604 ACTTCCAGAGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATTTGCAT 33653
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || ||||| |||||||||||| | ||||| ||||| | |||||| ||
Sbjct 33685 GTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCTTCTAATTGTTTGCCC 33744
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | || ||||| || || ||||| || ||||| |||||| |||
Sbjct 33745 GCAAAGATGAGCCTTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTAGCTTTA 33804
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| | ||| || |||| ||| | || |||||||| |||||
Sbjct 33805 ACGTTGTCGATGGTGTCCGAACTTTCAACCTCCAAGGTGATTGTCTTGCCGGTGAGAGTC 33864
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 33865 TTGACGAATATCTGCAT 33881
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232
||| ||||| | || || || ||||| || ||||| || | ||| ||| ||||||
Sbjct 32989 AACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTCCGCAAGAGTCCGACCATCTTC 33048
Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292
||| || || || || |||| || | || || || || ||||| ||||| |||||
Sbjct 33049 AAGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCCTTCCTTGTCTTG 33108
Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
||||||| || | | |||| || || | | || || |||| || | ||| ||
Sbjct 33109 AATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAAAGTGATCGTCTT 33168
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| ||||||||||| || |||||||||||
Sbjct 33169 CCCTGTCAGAGTTTTCACGAAAATCTGCAT 33198
>seq37694
Length=247
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232
||| ||||| | || || || ||||| || || || || | || ||| ||||||
Sbjct 2 AACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTC 61
Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292
|||||| || ||||| |||| || | || ||||||||||| || || || |||||
Sbjct 62 AAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTG 121
Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
||| ||| || | | |||| |||||||| | ||| || |||| || | || ||
Sbjct 122 AATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 181
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || |||||||||||||| || |||||
Sbjct 182 TCCAGTGAGAGTTTTTACAAAGATTTGCAT 211
>seq25669
Length=30460
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229
||| || | ||| | || ||||| || || |||||||||||| | |||||| ||
Sbjct 8303 CAAGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTC 8244
Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
|| || || || || || ||||||| | ||| ||||||||||| ||||| || |||||
Sbjct 8243 CTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 8184
Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349
||||| || | | || | |||||| | | ||||| || | ||| | ||
Sbjct 8183 CTGGATCTTGGCCTTCACGTTATCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGT 8124
Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||||||| || ||||| || |||||||||||
Sbjct 8123 CTTGCCGGTTAGGGTTTTGACGAAAATCTGCAT 8091
>seq45547
Length=474
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || ||||| | || ||||| || || |||||||||||
Sbjct 209 ATACCACCACGCAGACGAAGGACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCA 268
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | ||||||||| || || || || | || || | || |||||||||
Sbjct 269 ACAAGAGTCCTGCCATCTTCAAGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGA 328
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| | || || ||||| ||| |||| || | | |||| |||||||| | |||
Sbjct 329 GGGACCCCCTCCTTGTCCTGAATTTTTTCCTTCATATTATCAAGGGTGTCGGAGCTTTCC 388
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || || || | ||| |||||||| || |||||
Sbjct 389 ACTTCCAGAGTGATAGTCTTTCCAGTGAAAGTCTTTACAAAGATTTGCAT 438
>seq36798
Length=236
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232
||| ||||| | || || || ||||| || ||||| || | ||| ||| ||||||
Sbjct 222 AACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTCCGCAAGAGTCCGACCATCTTC 163
Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292
||| || || || || |||| || | || || || || ||||| ||||| |||||
Sbjct 162 AAGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCCTTCCTTGTCTTG 103
Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
||||||| || | | |||| || || | | || || |||| || | ||| ||
Sbjct 102 AATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAAAGTGATCGTCTT 43
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| ||||||||||| || |||||||||||
Sbjct 42 CCCTGTCAGAGTTTTCACGAAAATCTGCAT 13
>seq31682
Length=6253
Score = 82.4 bits (90), Expect = 6e-11
Identities = 85/108 (79%), Gaps = 4/108 (4%)
Strand=Plus/Minus
Query 114180 TGTATCGTAGATT--CTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGT 114236
|| || ||| ||| |||| || || |||||||| ||| | |||||| |||||||||
Sbjct 1320 TGGATAGTATATTACCTTTCTGGATATTGTAATCAGCT-AGAGTACGGCCATCTTCAAGC 1262
Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284
||||| |||||| |||| || ||||| || ||||||||||| ||| ||
Sbjct 1261 TGTTTTCCAGCGAAGATCAGTCGCTGCTGATCCGGAGGAATTCCTGCT 1214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419886588581964
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