Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9418 118 9e-22 seq26443 109 5e-19 seq9952 107 2e-18 seq247 104 2e-17 seq37694 100 2e-16 seq25669 100 2e-16 seq45547 91.5 1e-13 seq36798 91.5 1e-13 seq31682 82.4 6e-11 >seq9418 Length=21897 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || | || | || ||||| || ||||||||||||||| Sbjct 11325 ATACCACCACGCAGACGCAGGACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCG 11266 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| || || || || ||| |||| || | ||| ||||||||| Sbjct 11265 GCCAAAGTACGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGA 11206 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| ||| | | || | ||||||| || || Sbjct 11205 GGGATTCCTTCCTTGTCCTGGATCTTAGCTTTCACGTTGTCGATGGTGTCGCTGCTCTCC 11146 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| |||| || || ||||| |||||||| Sbjct 11145 ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 11096 >seq26443 Length=10536 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | || | ||| | ||||| || || ||||||||||||||| Sbjct 9046 ATACCTCCCCTCAGCCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCG 9105 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||||| || || ||||||||| |||| | | ||| |||||||| Sbjct 9106 GCCAAGGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGG 9165 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | || | |||||| || || Sbjct 9166 GGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCACTGCTCTCC 9225 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||||||||| || ||||| || ||||| Sbjct 9226 ACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACAAAGATTTGCAT 9275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || || | ||| | ||| | || || || || || |||||||||||| Sbjct 9274 ATACCACCCCTCAGCCTGAGAACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCG 9333 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || || || || || ||| |||| || | ||| |||||||| Sbjct 9334 GCCAAGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGG 9393 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| ||| | | || | ||||||| || || Sbjct 9394 GGGATCCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTCGCTGCTCTCC 9453 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || |||||||| || || ||||| |||||||| Sbjct 9454 ACCTCCAAAGTGATTGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 9503 >seq9952 Length=36685 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || ||||| || || ||||||||||| ||| | |||||| || ||||| || || || Sbjct 3945 GTCGATTCCTTCTGGATGTTGTAATCAGCT-AGAGTACGGCCGTCCTCAAGCTGCTTTCC 4003 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| | ||| ||||||||||| |||||||| ||||| ||||| || Sbjct 4004 GGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 4063 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| | | ||||| || | ||| | || |||||||| || || Sbjct 4064 GACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTAAGGGT 4123 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| || || |||||||| Sbjct 4124 TTTGACGAAGATCTGCAT 4141 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 |||||| || | ||| | ||||||||| || || ||||||||||| || ||| || Sbjct 3698 TCTCAACACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAATCAGCCAGAGTGCGGCC 3757 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| || || || || || ||||||| | ||| || |||||||| |||||||| || Sbjct 3758 ATCTTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGCTCCGGAGGGATGCCTTCCTT 3817 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTT--CAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||| ||| || | |||| | ||| | | ||| |||| || || || | || Sbjct 3818 GTCCTGTATC-TTGGCTTTAAC-GTTGCCGATGGTATCGGAACTCTCAACCTCGAGAGTG 3875 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| |||||||| || || || || || |||||||| Sbjct 3876 ATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 3913 >seq247 Length=47399 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || ||||| | | ||| ||||| | || || || ||||| || || || || Sbjct 33424 ATTCCACCCCGTAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCT 33483 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||||||||| || ||||| |||| || | || ||||||||| Sbjct 33484 GCAAGGGTCCGACCATCTTCAAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGA 33543 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||| ||| || | | |||| |||||||| | ||| Sbjct 33544 GGGATTCCCTCCTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCT 33603 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || |||||||||||||| || ||||| Sbjct 33604 ACTTCCAGAGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATTTGCAT 33653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| |||||||||||| | ||||| ||||| | |||||| || Sbjct 33685 GTGGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCTTCTAATTGTTTGCCC 33744 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | || ||||| || || ||||| || ||||| |||||| ||| Sbjct 33745 GCAAAGATGAGCCTTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTAGCTTTA 33804 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| || |||| ||| | || |||||||| ||||| Sbjct 33805 ACGTTGTCGATGGTGTCCGAACTTTCAACCTCCAAGGTGATTGTCTTGCCGGTGAGAGTC 33864 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 33865 TTGACGAATATCTGCAT 33881 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || || || ||||| || ||||| || | ||| ||| |||||| Sbjct 32989 AACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTCCGCAAGAGTCCGACCATCTTC 33048 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || || || || |||| || | || || || || ||||| ||||| ||||| Sbjct 33049 AAGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCCTTCCTTGTCTTG 33108 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||||| || | | |||| || || | | || || |||| || | ||| || Sbjct 33109 AATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAAAGTGATCGTCTT 33168 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||||||||| || ||||||||||| Sbjct 33169 CCCTGTCAGAGTTTTCACGAAAATCTGCAT 33198 >seq37694 Length=247 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || || || ||||| || || || || | || ||| |||||| Sbjct 2 AACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTC 61 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||| || ||||| |||| || | || ||||||||||| || || || ||||| Sbjct 62 AAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTG 121 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| ||| || | | |||| |||||||| | ||| || |||| || | || || Sbjct 122 AATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 181 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||||||||||||| || ||||| Sbjct 182 TCCAGTGAGAGTTTTTACAAAGATTTGCAT 211 >seq25669 Length=30460 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||| | || ||||| || || |||||||||||| | |||||| || Sbjct 8303 CAAGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTACGGCCGTC 8244 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || || || || ||||||| | ||| ||||||||||| ||||| || ||||| Sbjct 8243 CTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 8184 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| || | | || | |||||| | | ||||| || | ||| | || Sbjct 8183 CTGGATCTTGGCCTTCACGTTATCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGT 8124 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||| || ||||| || ||||||||||| Sbjct 8123 CTTGCCGGTTAGGGTTTTGACGAAAATCTGCAT 8091 >seq45547 Length=474 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || ||||| || || ||||||||||| Sbjct 209 ATACCACCACGCAGACGAAGGACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCA 268 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||| || || || || | || || | || ||||||||| Sbjct 269 ACAAGAGTCCTGCCATCTTCAAGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGA 328 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || | || || ||||| ||| |||| || | | |||| |||||||| | ||| Sbjct 329 GGGACCCCCTCCTTGTCCTGAATTTTTTCCTTCATATTATCAAGGGTGTCGGAGCTTTCC 388 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || | ||| |||||||| || ||||| Sbjct 389 ACTTCCAGAGTGATAGTCTTTCCAGTGAAAGTCTTTACAAAGATTTGCAT 438 >seq36798 Length=236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | || || || ||||| || ||||| || | ||| ||| |||||| Sbjct 222 AACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTCCGCAAGAGTCCGACCATCTTC 163 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || || || || |||| || | || || || || ||||| ||||| ||||| Sbjct 162 AAGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCCTTCCTTGTCTTG 103 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||||| || | | |||| || || | | || || |||| || | ||| || Sbjct 102 AATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAAAGTGATCGTCTT 43 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||||||||| || ||||||||||| Sbjct 42 CCCTGTCAGAGTTTTCACGAAAATCTGCAT 13 >seq31682 Length=6253 Score = 82.4 bits (90), Expect = 6e-11 Identities = 85/108 (79%), Gaps = 4/108 (4%) Strand=Plus/Minus Query 114180 TGTATCGTAGATT--CTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGT 114236 || || ||| ||| |||| || || |||||||| ||| | |||||| ||||||||| Sbjct 1320 TGGATAGTATATTACCTTTCTGGATATTGTAATCAGCT-AGAGTACGGCCATCTTCAAGC 1262 Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||||| |||||| |||| || ||||| || ||||||||||| ||| || Sbjct 1261 TGTTTTCCAGCGAAGATCAGTCGCTGCTGATCCGGAGGAATTCCTGCT 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419886588581964