Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq26787 242 7e-59 seq13309 239 8e-58 >seq26787 Length=21907 Score = 242 bits (268), Expect = 7e-59 Identities = 571/856 (67%), Gaps = 26/856 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | |||| |||||| ||||||||| | || || Sbjct 16848 ATCTGGGAGATGTACAAGAAAGCTGAAGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTC 16789 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAAC 42419 | ||||| | |||||| | | ||| |||| ||| ||| || Sbjct 16788 TCTCAGGACGTTCGCCACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACGCAC 16729 Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 | || ||||||||||||||||| |||||||| ||| ||||| || ||| |||||| Sbjct 16728 GTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCAGGTTT 16669 Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| ||||| ||| |||||||| |||||||||||||||||| || || ||| Sbjct 16668 ATGAAGGAGGTCCAGGTAGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAG 16609 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 ||| | ||||| ||| ||||| | |||||| | || |||||| |||| |||| Sbjct 16608 AACATTCACTCCGAGATGTACAGCCTCCTGCTCGAGACCTACATCAAGGAT----TCGAA 16553 Query 42600 CGTAA----CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | || | | || ||| || || |||||||| || ||| || |||||||||| | Sbjct 16552 AGAAAAAAGCCGCCTTTTCCGCGCAATCGAGACGATTCCTTGCGTCGCGAAGAAGGCGCA 16493 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 |||||| | || |||||||| | || | | || | ||| ||||| |||| || Sbjct 16492 GTGGGCGTTGAAATGGATCGACGG---CGGGGAGTCCTTTGCTGAGCGGCTGATAGCGTT 16436 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 || |||||| || ||||||||||| || |||| ||| || |||||||| ||| | Sbjct 16435 CGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATTTTCTGGCTGAAGAA 16376 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | | || |||||| ||||| |||||||| ||||| || ||| | ||||| || || Sbjct 16375 GCGAGGGTTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCGCGAGACGAAGGTCT 16316 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 ||| | || || ||||| | |||| | || | | | |||||| |||| Sbjct 16315 GCACTGTGATTTCGCCTGTTTGCTGTACGGGA---TGATGAAGATGAAGCCCAGCGAGGA 16259 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC----ACGC 42951 ||| || || || || || || ||||| ||||||| |||||| || |||| Sbjct 16258 GCGCGTGAAGGGGATTGTCCGCGATGCGGTGGATATCGAGAGGGAGTTTGTCTGTGACGC 16199 Query 42952 AGTCGC-TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | ||| ||| |||| || ||||| | | ||| | ||||||| || Sbjct 16198 TCTCCCTTGCGCGT-----TGGTTGGGATGAATGGGGTGTTGATGAGTCAGTACATTGAG 16144 Query 43011 TACGTCGCCGACCATCTCCTGTGC-CAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG 43069 | || ||||| | ||| | || ||| | |||| |||||||| | Sbjct 16143 TTTGTAGCCGATAGGTTGCTGGACTCACTTGGCT-ACAGCAAAATCTACAACGTGATCAA 16085 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| || | |||||| |||||| || | || |||||||| || ||||||||| | Sbjct 16084 CCCCTTTGATTGGATGGAGCTGATCTCGCTGCAAGGGAAGACCAATTTCTTCGAGAAGAG 16025 Query 43130 CGTCGCCGACTACCAG 43145 |||| || || ||| Sbjct 16024 AGTCGGGGAGTATCAG 16009 >seq13309 Length=30306 Score = 239 bits (264), Expect = 8e-58 Identities = 568/855 (66%), Gaps = 24/855 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || || |||| |||||| ||||||||| | || || Sbjct 5820 ATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTC 5879 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAAC 42419 | ||||| | |||||| | | ||| |||| ||| ||| || Sbjct 5880 TCTCAGGACGTTCGCCACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACGCAC 5939 Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 | || |||||||||||||| || |||||||| ||| |||||| || ||| ||||||| Sbjct 5940 GTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCCTTGAGAATCTCGCCGGCAGGTTC 5999 Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| ||||| ||| |||||||| |||||||||||||||||| || || ||| Sbjct 6000 ATGAAGGAGGTCCAGGTGGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAG 6059 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 ||| | ||||| ||| ||||| | |||||| | || |||||| |||| |||| Sbjct 6060 AACATTCACTCCGAGATGTACAGCCTCCTGCTCGAGACCTACATCAAGGAT----TCGAA 6115 Query 42600 CGTAA----CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | || | | |||||| || || || ||||| || ||| | |||||||||| | Sbjct 6116 AGAAAAAAGCCGTCTGTTCCGTGCAATCGACACGATTCCTTGCGTGGCGAAGAAGGCGCA 6175 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 |||||| | || |||||||| | || | || | |||||||||| | || || Sbjct 6176 GTGGGCGTTGAAATGGATCGACGG---CGGGGAGTGCTTTGCCGAGAGGCTGATTGCGTT 6232 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 || ||| || || ||||||||||| || |||| ||| || |||||||| ||| | Sbjct 6233 CGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATTTTCTGGCTGAAGAA 6292 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | | || |||||| ||| | |||||||||||||| || ||| | ||||| || || Sbjct 6293 GCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGAGCTGATCTCGCGAGACGAAGGCCT 6352 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 ||| | || || |||||| | |||| | || | | | |||||| |||| Sbjct 6353 GCACTGTGATTTCGCCTGCTTGCTGTACGGGA---TGATGAAGATGAAGCCCAGCGAGGA 6409 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC----ACGC 42951 ||| || | || || || || ||||| ||||||| ||||| || |||| Sbjct 6410 GCGCGTAAAAGGGATTGTCCGCGATGCGGTGGATATCGAGAGAGAGTTTGTCTGTGACGC 6469 Query 42952 AGTCGC-TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 || | ||| ||| |||| || ||||| | || ||| | ||||||| || Sbjct 6470 GCTCCCTTGCGCGT-----TGGTTGGGATGAATGGGGTGCTGATGAGTCAGTACATTGAG 6524 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGC 43070 | || ||||| | ||| | | || |||| ||||||| | || | Sbjct 6525 TTTGTAGCCGATAGGTTGCTGGACTCTCTTGGCTACAGCAAAATCTACAATGTGACGAAC 6584 Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 || || || | |||||| ||||||||| | || ||||| || || ||||||||| | Sbjct 6585 CCATTTGATTGGATGGAGCTTATCTCGTTGCAAGGGAAGACTAATTTCTTCGAGAAGAGA 6644 Query 43131 GTCGCCGACTACCAG 43145 |||| || || ||| Sbjct 6645 GTCGGAGAGTATCAG 6659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943767910196720