Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq19360 91.5 1e-13
seq8519 91.5 1e-13
seq25669 89.7 4e-13
seq5564 87.8 1e-12
seq45547 86.0 5e-12
seq26443 86.0 5e-12
seq9418 82.4 6e-11
>seq19360
Length=6746
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| || || | |||||||| ||||||||| ||||||||||||||||| || ||
Sbjct 5119 CCTCCCCTAAGTCTCAGCACCAAGTGAAGCGTGGATTCCTTCTGAATGTTGTAGTCAGCT 5178
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| |||| | || ||||||||||| || ||||| || || | |||||||||
Sbjct 5179 AGGGTTCGCCCATCTTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGATC 5231
>seq8519
Length=37620
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| || || | |||||||| ||||||||| ||||||||||||||||| || ||
Sbjct 7733 CCTCCCCTAAGTCTCAGCACCAAGTGAAGCGTGGATTCCTTCTGAATGTTGTAGTCAGCT 7674
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| |||| | || ||||||||||| || ||||| || || | |||||||||
Sbjct 7673 AGGGTTCGCCCATCTTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGATC 7621
>seq25669
Length=30460
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||||| |||||||| ||||| || || || |||||| ||||| |||||||| ||
Sbjct 9001 CCTCCTCGGAGCCGCAGGACCAGGTGGAGTGTCGACTCCTTTTGAATATTGTAATCCGC- 8943
Query 33961 AATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| || || |||| ||||| ||||| || || || | |||||| ||| ||
Sbjct 8942 AAGCGTCCTTCCATCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGG 8883
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079
| | ||| || ||| || || ||| | | | | |||||| | |||
Sbjct 8882 AATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTATCGATCGTATCAGAACTCTCGAC 8823
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||| | ||||| ||||||||||| || || || |||||||| |||||
Sbjct 8822 TTCCAGAGTTATCGTTTTTCCGGTGAGCGTCTTGACAAAGATCTGCAT 8775
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1493 CCTCCTCTCAATCGCAGCACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCCGCT 1552
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
| || | || || | ||||| |||||||| || || | | ||||||||
Sbjct 1553 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCCGCTGATCC 1606
>seq5564
Length=26244
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/237 (68%), Gaps = 18/237 (8%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || || ||||| || |||| |||||| || ||||||||||||||| || |||||
Sbjct 4888 ACCACCCCTGAGCCGAAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCTGC 4829
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
||| || | | || || | ||||| || ||||| |||| | |||||||||| ||
Sbjct 4828 CAAGGTTCTCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 4769
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC--- 34076
| | ||| |||| | | | ||||||| | ||| | ||| | | ||
Sbjct 4768 AATTCCCTCCTTGT-CTTGGATCTTTGCTT--------TAACATTGTCAATCGTGTCGGA 4718
Query 34077 GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || ||| || ||||| ||||| ||||| || ||||||||||| |||||
Sbjct 4717 GCTCTCAACCTCAAGTGTAATTGTCTTTCCAGTTAGGGTCTTCACAAAGATCTGCAT 4661
>seq45547
Length=474
Score = 86.0 bits (94), Expect = 5e-12
Identities = 162/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| || || |||| |||||| ||| |||||||| ||||||||||| |
Sbjct 211 ACCACCACGCAGACGAAGGACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCAAC 270
Query 33960 CAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017
|| ||| || | || || | ||||| || ||||||||||| | ||||| |||
Sbjct 271 -AAGAGTC-CTGCCATCTTCAAGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGA 328
Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCG 34077
|| || | ||| |||||| |||||||| ||| || | | | || | || ||
Sbjct 329 GGGACCCCCTCCTTGTCCTGAATTTTTTCCTTCATATTATCAAGGGTGTC-GGAGCTTTC 387
Query 34078 CA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
|| ||| | || || || ||||| || | || || |||||||||||||||
Sbjct 388 CACTTCCAGAGTGATAGTCTTTCCAGTGAAAGTCTTTACAAAGATTTGCATT 439
>seq26443
Length=10536
Score = 86.0 bits (94), Expect = 5e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || ||||||| || |||||||| || || ||||||||| ||||||||||| ||
Sbjct 9276 ACCACCCCTCAGCCTGAGAACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 9335
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
||| || |||| |||| ||||| ||||| || ||||| | |||||| |||
Sbjct 9336 CAAGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCC 9390
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| ||||||| || || ||||| || || ||||||||||||||||||||| ||
Sbjct 9048 ACCTCCCCTCAGCCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGC 9107
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
||| || |||| |||| ||||| || || || |||| | |||||| ||| ||
Sbjct 9108 CAAGGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 9167
Query 34020 CACGCTCTCTTTGTCC 34035
| | ||| ||||||
Sbjct 9168 GATTCCCTCCTTGTCC 9183
>seq9418
Length=21897
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| || |||| ||||| ||||| || || |||||||||||| |||||||| ||
Sbjct 11095 ACCTCCCCTGAGCCTGAGCACAAGATGCAGGGTAGACTCCTTCTGAATATTGTAATCGGC 11036
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
||| || |||| || | ||||| ||||| || |||| | ||||||||||
Sbjct 11035 CAAGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCC 10981
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| ||||| || || ||||| || |||||||||||||||||||| ||
Sbjct 11323 ACCACCACGCAGACGCAGGACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCGGC 11264
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
||| || |||| |||| ||||| ||||| || ||||| | |||||| |||
Sbjct 11263 CAAAGTACGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCC 11209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396828197334394
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