Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq19360 91.5 1e-13 seq8519 91.5 1e-13 seq25669 89.7 4e-13 seq5564 87.8 1e-12 seq45547 86.0 5e-12 seq26443 86.0 5e-12 seq9418 82.4 6e-11 >seq19360 Length=6746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || | |||||||| ||||||||| ||||||||||||||||| || || Sbjct 5119 CCTCCCCTAAGTCTCAGCACCAAGTGAAGCGTGGATTCCTTCTGAATGTTGTAGTCAGCT 5178 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | |||| | || ||||||||||| || ||||| || || | ||||||||| Sbjct 5179 AGGGTTCGCCCATCTTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGATC 5231 >seq8519 Length=37620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || | |||||||| ||||||||| ||||||||||||||||| || || Sbjct 7733 CCTCCCCTAAGTCTCAGCACCAAGTGAAGCGTGGATTCCTTCTGAATGTTGTAGTCAGCT 7674 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | |||| | || ||||||||||| || ||||| || || | ||||||||| Sbjct 7673 AGGGTTCGCCCATCTTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGATC 7621 >seq25669 Length=30460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| |||||||| ||||| || || || |||||| ||||| |||||||| || Sbjct 9001 CCTCCTCGGAGCCGCAGGACCAGGTGGAGTGTCGACTCCTTTTGAATATTGTAATCCGC- 8943 Query 33961 AATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| || || |||| ||||| ||||| || || || | |||||| ||| || Sbjct 8942 AAGCGTCCTTCCATCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGG 8883 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| || ||| || || ||| | | | | |||||| | ||| Sbjct 8882 AATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTATCGATCGTATCAGAACTCTCGAC 8823 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||||| ||||||||||| || || || |||||||| ||||| Sbjct 8822 TTCCAGAGTTATCGTTTTTCCGGTGAGCGTCTTGACAAAGATCTGCAT 8775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| |||||||||||||||||||| |||||||| ||||||||||| || Sbjct 1493 CCTCCTCTCAATCGCAGCACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAATCCGCT 1552 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || | || || | ||||| |||||||| || || | | |||||||| Sbjct 1553 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCCGCTGATCC 1606 >seq5564 Length=26244 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/237 (68%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || ||||| || |||| |||||| || ||||||||||||||| || ||||| Sbjct 4888 ACCACCCCTGAGCCGAAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCTGC 4829 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | | || || | ||||| || ||||| |||| | |||||||||| || Sbjct 4828 CAAGGTTCTCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 4769 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC--- 34076 | | ||| |||| | | | ||||||| | ||| | ||| | | || Sbjct 4768 AATTCCCTCCTTGT-CTTGGATCTTTGCTT--------TAACATTGTCAATCGTGTCGGA 4718 Query 34077 GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || ||||| ||||| ||||| || ||||||||||| ||||| Sbjct 4717 GCTCTCAACCTCAAGTGTAATTGTCTTTCCAGTTAGGGTCTTCACAAAGATCTGCAT 4661 >seq45547 Length=474 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || |||| |||||| ||| |||||||| ||||||||||| | Sbjct 211 ACCACCACGCAGACGAAGGACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCAAC 270 Query 33960 CAATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 || ||| || | || || | ||||| || ||||||||||| | ||||| ||| Sbjct 271 -AAGAGTC-CTGCCATCTTCAAGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGA 328 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCG 34077 || || | ||| |||||| |||||||| ||| || | | | || | || || Sbjct 329 GGGACCCCCTCCTTGTCCTGAATTTTTTCCTTCATATTATCAAGGGTGTC-GGAGCTTTC 387 Query 34078 CA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||| | || || || ||||| || | || || ||||||||||||||| Sbjct 388 CACTTCCAGAGTGATAGTCTTTCCAGTGAAAGTCTTTACAAAGATTTGCATT 439 >seq26443 Length=10536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||||| || |||||||| || || ||||||||| ||||||||||| || Sbjct 9276 ACCACCCCTCAGCCTGAGAACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 9335 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || |||| |||| ||||| ||||| || ||||| | |||||| ||| Sbjct 9336 CAAGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCC 9390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| ||||||| || || ||||| || || ||||||||||||||||||||| || Sbjct 9048 ACCTCCCCTCAGCCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGC 9107 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || |||| |||| ||||| || || || |||| | |||||| ||| || Sbjct 9108 CAAGGTACGGCCGTCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 9167 Query 34020 CACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 9168 GATTCCCTCCTTGTCC 9183 >seq9418 Length=21897 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| ||||| ||||| || || |||||||||||| |||||||| || Sbjct 11095 ACCTCCCCTGAGCCTGAGCACAAGATGCAGGGTAGACTCCTTCTGAATATTGTAATCGGC 11036 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || |||| || | ||||| ||||| || |||| | |||||||||| Sbjct 11035 CAAGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCC 10981 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||| || || ||||| || |||||||||||||||||||| || Sbjct 11323 ACCACCACGCAGACGCAGGACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCGGC 11264 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || |||| |||| ||||| ||||| || ||||| | |||||| ||| Sbjct 11263 CAAAGTACGGCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCC 11209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396828197334394