Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq26787 145 9e-30 seq13309 125 9e-24 seq11108 91.5 2e-13 seq25823 82.4 9e-11 seq2295 82.4 9e-11 >seq26787 Length=21907 Score = 145 bits (160), Expect = 9e-30 Identities = 343/510 (67%), Gaps = 15/510 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||| ||||| || ||||| || || || |||||| |||||| ||||| | || Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| ||||||||| | || || || ||||||||||| || || || || Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGA--GCGCGACTTTGTGTCAAACCACTTCATC 126235 |||||||| | || |||||||||||||| | || | ||| | ||| |||| | Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGACTCCCCGCC-----GTCGATCCATTTCAAC 16486 Query 126236 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGAT--CGCTTCAAAGAGTTCCT 126293 |||||||||||||| ||| ||| || || | |||| ||| ||| |||| | || Sbjct 16487 GCCCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGATTGCGCGGAAAAG-GCGGCT 16545 Query 126294 TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGA 126353 | |||||| | ||| |||||||| | || | || || | ||| ||| | Sbjct 16546 T-TTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAA 16604 Query 126354 CCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 126413 | ||| | | ||| | ||||||| | ||||| ||| || ||| ||||| | Sbjct 16605 TGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCTACCTGGACCTCCT 16664 Query 126414 CGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 126473 ||| || || |||||| | || || || ||||| | || || || || | Sbjct 16665 TCATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGA 16724 Query 126474 GGATATACTTTATGAATTTCTGTTCATTCTC-GTTCAGG-GTCTTCCAGTCGTCAAGATC 126531 ||| | | | ||||| | | || | | ||| ||| ||| ||||| | || || Sbjct 16725 GGACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTC--CCAGTGGCGAACGTC 16782 Query 126532 CTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 || ||||||||||||||||| || ||||| Sbjct 16783 CTGAGAGAGATCTACCTCCTCGGCTGTCCA 16812 >seq13309 Length=30306 Score = 125 bits (138), Expect = 9e-24 Identities = 330/499 (66%), Gaps = 11/499 (2%) Strand=Plus/Minus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || || | |||||||||||| || |||||||| | ||| |||| |||||| Sbjct 6655 TACTCTCCGACTCTCTTCTCGAAGAAATTAGTCTTCCCTTGCAACGAGATAAGCTCCATC 6596 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG--GCACCCCAATCTGTTTGAGGAGAC 125876 |||||||||||||| | || | ||| ||| | | || | || || | | Sbjct 6595 CAATCAAATGGGTTCGTCACATTGTAGATT-TTGCTGTAGCCAAGAGAGTCC-AGCAACC 6538 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 ||| | || |||||||||||| | |||| | | ||||| || | | | Sbjct 6537 TATCGGCTACAAACTCAATGTACTGACTCATCAGCACCCCATTCATCCCAACCAACGCGC 6478 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | ||||||||||| ||| ||| | |||| || ||||| || || || || || | | Sbjct 6477 AAGGGAGCGCGTCACAGACAAACTCTCTCTCGATATCCACCGCATCGCGGACAATCCCTT 6418 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTT 126056 | | ||| | | || | | || || | | || ||| || || Sbjct 6417 TTACGCGCTCCTCGCTGGGCTTCATCTTCATCATCCCGTACAGCAAGCAGGCGAAATCAC 6358 Query 126057 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGAC 126116 ||| || || ||||| || ||||| || || ||||||||| || ||| ||||| | | Sbjct 6357 AGTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACC 6298 Query 126117 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACAC 126176 | |||||||||| ||||||||||| || || || ||||||||||| || || || | Sbjct 6297 CGCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGC 6238 Query 126177 ACGCGAACGCAAAGAGACGCTCAGCAAAGGA--GCGCGACTTTGTGTCAAACCACTTCAT 126234 | |||||||||| || | ||| |||||| | | || | ||| | ||| |||| Sbjct 6237 AGGCGAACGCAATCAGCCTCTCGGCAAAGCACTCCCCGCC-----GTCGATCCATTTCAA 6183 Query 126235 CGCCCACTGCGCCTTTTTC 126253 ||||||||||||||| ||| Sbjct 6182 CGCCCACTGCGCCTTCTTC 6164 >seq11108 Length=39206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 229/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 10875 ||||||||| || | ||| || || || | |||| || ||| || |||| || Sbjct 4666 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 4722 Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCG 10933 || || ||||||||||| || || || || | ||| || || | || ||||| | | Sbjct 4723 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 4782 Query 10934 GGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 | || | ||| | | || |||| | || || || ||||||||||| | || || || Sbjct 4783 GCCAATGCCAGCTCCTCT---TTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 4839 Query 10993 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||||| || || || || |||| || || |||| ||||||||||| Sbjct 4840 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 4899 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 11111 |||||||| || ||||| | || | | | | |||| | ||| |||||| | |||| Sbjct 4900 AACAAACATCTCGACAAATTCGGAGCCAG-ATATTGAAAAGAATGGGACGCCAGCCTCAC 4958 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || |||||| || || ||||||||||| ||||| ||| Sbjct 4959 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 4999 >seq25823 Length=50596 Score = 82.4 bits (90), Expect = 9e-11 Identities = 226/341 (66%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 10875 ||||||||| || | ||| || || || | |||| || ||| || |||| || Sbjct 44494 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 44438 Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 || || ||||||||||| || || || || | ||| || || | || ||||| | Sbjct 44437 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 44378 Query 10936 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 |||| || || | | |||| | || || || ||||||||||| | || || || Sbjct 44377 ---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 44321 Query 10993 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||||| || || || || |||| || || |||| ||||||||||| Sbjct 44320 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 44261 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTGGAT-GAAGGGGACGTTGGATTCAC 11111 |||||||| || ||||| | || | | || |||| | ||| || ||| | |||| Sbjct 44260 AACAAACATCTCGACAAATTCGGAGCCAGAT-ATTGAAAAGAATGGAACGCCAGCCTCAC 44202 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | || |||||| || || ||||||||||| ||||| ||| Sbjct 44201 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 44161 >seq2295 Length=9791 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 ||||||||||| |||||||||||||||||||||||||| || | || || ||| || Sbjct 5627 ATAGATATTGGAAGTGTATGGCTCAAAGCACTCATTGTTTCCAAGAATCTGACTGGTTGA 5686 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTT 114045 || || ||||| ||||||| ||||| ||| | || ||| || Sbjct 5687 AGCAGTAGGCATAGGTGCCACCAGAAGTGAGTTCCTGACACCGTT 5731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596992223472760