Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_011167.1 Length=53104 Score E Sequences producing significant alignments: (Bits) Value seq2 2307 0.0 seq28673 390 4e-104 seq3 109 2e-19 >seq2 Length=12201 Score = 2307 bits (2558), Expect = 0.0 Identities = 1720/2006 (86%), Gaps = 16/2006 (1%) Strand=Plus/Plus Query 43421 TGCGATACTCCCCATTCTATAGCGAGATGGACAAGTTTTTTATGAACTTCTTGATCTAAC 43480 ||||| ||||||||||| || || | |||||||| || || || |||| || || Sbjct 8063 TGCGAAACTCCCCATTCAATCGCTAATTGGACAAGCTTAGAGTGCGCTCCTTGCTCCAAT 8122 Query 43481 TTTGCATGTATATATCTTTTAGTATCGATATAGTCATAATTGTGTATTTCTGCAATATAA 43540 ||||| || || || |||| || || |||| ||||| |||||||| ||||||| Sbjct 8123 TTTGCGTGAATGTACTTTTTGGTGTCCTTATATTCATACGCATGTATTTCACTAATATAA 8182 Query 43541 GATATGTTTAGGTGTTCTGTAATTAATTTAGACATGTATTGTGTAGTGGTTATTCCTTTT 43600 || || |||||||| || ||||||||||||||||||||||| ||||| || | Sbjct 8183 TCAATTCCGAGATGTTCTGTGATCAATTTAGACATGTATTGTGTAGTAGTTATATTTTGT 8242 Query 43601 TGGTATGCTGAGGATCTTATTAGTTGTCTTTGTATTTCATTTACGGGGATTTTTACGTCT 43660 ||| | ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 8243 TGGAACGCTGAAGATCTTATTAATTGTCTTTGTATTTCATTTACGGGGATTTTTACATCT 8302 Query 43661 TTCTTTTTATCGCAACGAGTTTTACGAAGTTGTTGGTTTGTTATTTTAGTAGATTTTCCG 43720 |||||||| || |||||||||||||| ||||||| ||||||||| |||||||||||| Sbjct 8303 TTCTTTTTGTCAGAACGAGTTTTACGAGGTTGTTGATTTGTTATTGTAGTAGATTTTCTA 8362 Query 43721 GAAGGTTCAAACATAGGGTTAACATTGCTCATGATGCTCTCCCCTTTCAAAATTAACCTC 43780 ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 8363 GAAAAACTAAACATAGGGTTAACATTGCTCATGATGCTCTCCCCTTTCAAATTCAACCTC 8422 Query 43781 CTCCCTC-TCTGTTAACACAGGGTCATAGTTCCAATATGCTATCATTCCTGCTGTTTTTG 43839 ||||| | ||||| | ||||| |||| |||||| |||||||| ||||||||||||||| Sbjct 8423 CTCCCCCCTCTGTATTCTCAGGGACATAATTCCAACATGCTATCGTTCCTGCTGTTTTTG 8482 Query 43840 AGAAAAGAGAGGAGGGATCTTATATTTTTGTTAGATA--GTTATTACCAATCGTTGAAAC 43897 ||| || ||||| ||| | | |||||| ||| ||| | | ||| | | || Sbjct 8483 AGAGGAGGGAGGAAGGAG-TAAAATTTTTCTTACATAAAGCTTTTATCTA-------AAT 8534 Query 43898 CATTAATTAACTCCATAGCATTATCGACAGCTTCTTCAGAAGGTTTCTCATCTTCTCCTG 43957 | | ||| |||||||||||||| || ||||||||||||| || |||||| |||||| Sbjct 8535 TAGCTAGTAAATCCATAGCATTATCAACGACTTCTTCAGAAGGCTTTTCATCTACTCCTG 8594 Query 43958 CATCATTCTGTATGCCATGAGTATTTATATTGATTAATAGCTTTTTAACTAATTGAAGCG 44017 |||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| | Sbjct 8595 CATCATTCTGTATGCCATGAGTATTTATATTGATTAGTAACTTCTTAACTAATTGAAGTG 8654 Query 44018 GATCTTCTTCACCAGCAACTTCAGCAAGTACCTGGTACATTTCTAATCtttttttAATCT 44077 |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 8655 GATCTTCTTCTCCTGCAACTTCAGCAAGTACCTGGTACATTTCTAATCTCTTTTTAATTT 8714 Query 44078 GCTTATTTACGTAACCCTTTTGCCCCTTACCTTGTTCCTCTAAACGAGTTACAAAGTTGT 44137 | |||||||| || || ||||| || ||||||||||||||||| |||||||| ||||| | Sbjct 8715 GTTTATTTACATACCCTTTTTGTCCTTTACCTTGTTCCTCTAATCGAGTTACGAAGTTAT 8774 Query 44138 AAAGGACCTTATCATTGTTAGGGTTAAGCTCAATTTGCAGCTTTTTCTTTTGTAAGTTTG 44197 | || ||||| |||||||| || || ||||||||||| |||||||||||||||||||||| Sbjct 8775 ACAGAACCTTGTCATTGTTTGGATTTAGCTCAATTTGAAGCTTTTTCTTTTGTAAGTTTG 8834 Query 44198 TCAAAGACATCACATCCTAAATAGTAGTATCCTAATAGGTTAGCTTCTTGACCATTTTCT 44257 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 8835 TCAAAGACATCACATCCTAAATAGTAGTATCCTAATAGGTTAGCTTCTTGACCGTTTTCT 8894 Query 44258 AGAACCGCAAATGTTGGGAATTGCTCTTTTTTCTTCTCAATACGCTTTTTATGAAGAGCA 44317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8895 AGAACCGCAAATGTTGGGAATTGCTCTTTTTTCTTCTCAATACGCTTTTTATGAAGAGCA 8954 Query 44318 GCCATTCCGCCAGTCCAAACGATTTTATCGTATACAGCTAAGTTAAACTTTTGAGACACT 44377 |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| Sbjct 8955 GCCATTCCACCAGTCCAGACGATTTTATCGTATACAGCTAAGTTGAACTTTTGAGAAACT 9014 Query 44378 TCACGTAACGCTGCATCGAAATGACGTTGTAATTCTTCATCTACTTTCTCAGCTACATCT 44437 |||||||| |||||||| |||||||||||||| |||||||| || ||||||||||| ||| Sbjct 9015 TCACGTAATGCTGCATCAAAATGACGTTGTAACTCTTCATCAACCTTCTCAGCTACGTCT 9074 Query 44438 TTATGAGTGTATAAGTCGTATAGAGAGCCATTGTACTTATAGCCATTTTCAAGGATATAG 44497 |||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct 9075 TTATGAGTGTATAAATCGTATAGAGAGCCGTTGTACTTATAGCCATTCTCAAGAATATAG 9134 Query 44498 TGCATGTTAGAAACACTTAAATCAGGTGTTTCGCCAATGTTATCGCGTACAATTTGTTCA 44557 |||||||| || || ||||||||||||||||| |||||||||||||| || ||||||||| Sbjct 9135 TGCATGTTCGACACGCTTAAATCAGGTGTTTCACCAATGTTATCGCGAACGATTTGTTCA 9194 Query 44558 ATAGCCATGAATGCTTTCTCGCAACCTAATTCAGTTCCTAAACGGTCGATAACAGCATTA 44617 |||||||| ||||||||||| || |||||||||||||||||||| || |||||||||||| Sbjct 9195 ATAGCCATAAATGCTTTCTCACAGCCTAATTCAGTTCCTAAACGATCAATAACAGCATTA 9254 Query 44618 CCAGACATATCAGTAACATCGAATGTACCGAATCCACCATCAATGATAAGGATACGATCT 44677 |||||||||||||||||||| ||||| || || |||||||| || ||||| ||||||||| Sbjct 9255 CCAGACATATCAGTAACATCAAATGTGCCAAACCCACCATCGATAATAAGAATACGATCT 9314 Query 44678 TCTTTATTAATAATTTCtttttttACCAGGTAATATTGTGTTCCTACTGGTTGTGGGATT 44737 |||||||||||||||||||| || || | |||||| || || || || ||||| || || Sbjct 9315 TCTTTATTAATAATTTCTTTCTTCACTAAGTAATACTGAGTGCCGACGGGTTGCGGAATA 9374 Query 44738 ACTAAACACTCTTTTACTTTAACTGTGATTAATTCACCGTTTACTTTCACTGCTGTTTCT 44797 ||||| || | ||| ||||||| ||||||||| | || |||||||| |||||||||||| Sbjct 9375 ACTAAGCATTGTTTCACTTTAATTGTGATTAACTGGCCATTTACTTTTACTGCTGTTTCT 9434 Query 44798 TCCATAGCGACCTTACGAATTGATTCGCGTTGATTACCGAAGTGAGATACTGGAAGACCG 44857 |||||||| || || |||| ||||| ||||||||||| ||||| |||||||||||||| Sbjct 9435 TCCATAGCTACTTTTTGAATCGATTCACGTTGATTACCAAAGTGTGATACTGGAAGACCT 9494 Query 44858 GTAACAAGTAACGGAATAGTAACGTTCTTCTTAAAGTCTTTTGCAATGAATCCGAATAGC 44917 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct 9495 GTAACAAGTAACGGAATTGTAACGTTCTTTTTAAAGTCTTTTGCAATGAATCCAAATAAT 9554 Query 44918 TGTTTCTTAAACGTTGGATCCTCATAACGTTTTGCTTTGTTCTCGCCAAGCGCGCGAATT 44977 || |||||||| |||||||||||||| || || ||||| ||||||||||| || || ||| Sbjct 9555 TGCTTCTTAAATGTTGGATCCTCATAGCGCTTCGCTTTATTCTCGCCAAGGGCACGGATT 9614 Query 44978 AATGGAAGTTTTGATTTTCTAGCTTCTTCTCCTATGTAGTAAGGGAAGTCGGTGTTCGTT 45037 ||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 9615 AATGGTAGTTTGGATTTTCTAGCTTCTTCTCCTATGTAGTATGGGAAGTCAGTGTTTGTT 9674 Query 45038 AATTCAATTTTTGTGAAACTAGCTTCGTTGTAGTAGTCATCAACAGGCGCTAACACCGAT 45097 | ||||||||| |||||||||||||| ||||||||||| || ||||| || ||||| ||| Sbjct 9675 AGTTCAATTTTCGTGAAACTAGCTTCATTGTAGTAGTCGTCTACAGGAGCCAACACAGAT 9734 Query 45098 AATTCTGTAATAACATCAGCCTCTAGTGATTTGTTTTTCTTTGAAGCACGCTTTGTAAAA 45157 ||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||| Sbjct 9735 AATTCTGTAATAACATCTGCCTCTAGTGATTTATTTTTCTTTGAAGCGCGTTTTGTAAAG 9794 Query 45158 CCATTTCCTAAGTCAATCGCATACGGATTTCCTAATAGCATATATATTCCCCTTTCAAAA 45217 |||||||||||||||||||| || ||||||||||||| |||||| |||||||||||| || Sbjct 9795 CCATTTCCTAAGTCAATCGCGTATGGATTTCCTAATAACATATACATTCCCCTTTCATAA 9854 Query 45218 CCAATGGTTAATCATTGATATTTTTGATTCTAACAGATACTTACGTTTAAATTCAATGAA 45277 ||| || |||||||||| || |||||||||||||||||| ||||| | |||||| || Sbjct 9855 CCATTGATTAATCATTGGTA-TTTTGATTCTAACAGATATTTACGCTAGGTTTCAATAAA 9913 Query 45278 ATATACCAAAAACGCTAAATTTATTATTGGTTAATCATTGATTATTAGTTTT--CAAGGT 45335 |||| |||||||| ||| || |||| |||| ||||| || || |||| | |||| Sbjct 9914 ATATGCCAAAAACAACAAA-ATACAATTGATTAACCATTGGTTTGTACTTTTTGCGAGGT 9972 Query 45336 TATAGGGCATCGCAAAGGCTTCGCAATATTAATAAAAATGCATGTTGCGAGGTAGGGAAG 45395 | | | |||||| |||||||| | ||| || ||||||| ||| | ||||||||||| Sbjct 9973 CGTTAGTCTTCGCAATGGCTTCGCTAAATTTAT-AAAATGCGTGTAGAAAGGTAGGGAAG 10031 Query 45396 ACATAGGCTTGTCCTCCCTAAGATTC 45421 |||| ||||||||||||||| |||| Sbjct 10032 CCATAAGCTTGTCCTCCCTAATATTC 10057 Score = 1021 bits (1132), Expect = 0.0 Identities = 761/888 (86%), Gaps = 2/888 (0%) Strand=Plus/Plus Query 40936 AATAA-AAATAGCCCCGTTTTTCACGAAGCTACATCCAAAAATCATCGTAATGAACATCT 40994 ||||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| |||||| Sbjct 7124 AATAATAAATAGCCCCGTTTTTAACGGAGCTACATCCAAAAGTCATCATAATGTACATCT 7183 Query 40995 TTATTTGTTATCTTTTTCAAAGCTCTCACAATCTTTTGTGCATTCTTCATTGTTGGAGAG 41054 || || |||| || ||||| ||| | | ||||||||||||||| ||||| ||||| || Sbjct 7184 TTGTTAGTTAATTTCTTCAATGCTTTTATAATCTTTTGTGCATTTTTCATGGTTGGCGAA 7243 Query 41055 AATTTATCACCTTGGCATACGCGACTTATTGTAGATTTACTTACACCGCTTCTTTCTGCT 41114 |||||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| ||| Sbjct 7244 AATTTATCTCCTTGGCATACACGACTAATAGTCGATTTACTTACCCCGCTTCTTTCCGCT 7303 Query 41115 AATTCTTGCTGAGTAATTTTGTTTTTCTCCAGAAAATTGGAGAGCTTTGACTTTCTCCCT 41174 ||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 7304 AATTCCTGTTGAGTAATTTTGTTTTTCTCCAGAAAATTGGAGAGCTTCGATTTTCTCCCT 7363 Query 41175 TTGCCAGAAATAAGCCATCCCATTCTAATCACTCCTGTTTTAAGTTCTTAGTACAAGAGT 41234 || ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| Sbjct 7364 TTACCAGAAATAAGCCATCCCATTTTA-TCACTCCTGTTTTAAATTCTTAGTACAAGAGT 7422 Query 41235 GGCCAAAGATTTCATTTTTTAAACATCCCGAAAATAGGAATCTTAATTATTATGAAAATC 41294 || |||||||||||||||||||||||| | |||||||||| |||| | |||||||||| Sbjct 7423 GGTCAAAGATTTCATTTTTTAAACATCTCAAAAATAGGAAATTTAAACACTATGAAAATC 7482 Query 41295 TGCGTTTCAGTAGGGATAGTTTCTTTCCAGGTTCTTCAGCATAATATTTCATGTAGTCAC 41354 | || |||| | ||||||||||| || ||||||||||||||| | ||||||||||| Sbjct 7483 TTCGCTTCAACAAAGATAGTTTCTTCCCTGGTTCTTCAGCATAAAACCGCATGTAGTCAC 7542 Query 41355 ACATTAAGATATTAATCAATTTATCAGCGGTATATCCATGCATAGGGTAGGTGTGAGCCA 41414 |||| | ||||| || ||||| ||||| ||| | || ||||||||| | | ||||||| Sbjct 7543 ACATCAGAATATTGATTAATTTTTCAGCTGTAAAACCGTGCATAGGGAAACTATGAGCCA 7602 Query 41415 TATCAGAGAAAAACACTTCAATTCTTCTCAATGTCCTTCTATCAATCTTCACTTCAACTG 41474 |||| || |||||||||||||||| ||| ||| ||| ||||||||| || || || || Sbjct 7603 TATCCGAAAAAAACACTTCAATTCGTCTTAATATCCGTCTATCAATTTTTACAGAAATTG 7662 Query 41475 TTCCGTACCTTTCATCATTTTCATTAAATTCTAATTCGCAATCTGTATAGTGCTTCTTAC 41534 | ||||| | || |||||||||||||| || || | |||| ||||| || ||||| | Sbjct 7663 TACCGTATCGATCGTCATTTTCATTAAACTCCAAATTAAAATCCGTATAATGTTTCTTGC 7722 Query 41535 TCTCTAGAATTTGATACAACTGCTCCATACTATTCTTGGATCTTATATGTTCCAGAAAGT 41594 ||||||| |||||||||| ||||||||||||||| || || | ||||||||| ||||||| Sbjct 7723 TCTCTAGGATTTGATACAGCTGCTCCATACTATTTTTAGAGCGTATATGTTCAAGAAAGT 7782 Query 41595 CCTCAACAAGTATCTCAGCTAAATCACTAGCGTTACACTCGTAATCTTCCTCTTCCATAT 41654 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 7783 CCTCAACAAGTATCTCAGCTAGATCACTAGCATTACACTCGTAATCTTCCTCTTCCATAT 7842 Query 41655 CCTCAATGATAATATTCATGCGGAATAAGTAAATTTTGAGCATCTTCACTTCAAAACGGT 41714 | || || ||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 7843 CTTCGATAATAATATTCATTCGAAATAAGTAAATTTTGAGCATCTTCACTTCAAAACGGT 7902 Query 41715 ATTTCTCTTTTAAAGCCCACTCAATTTTAGTCCGTTCCCACCAGTTCCCAGCACTCATTA 41774 | ||||||||||| ||| |||||||| || || |||||||| || | ||||||||| | Sbjct 7903 ACTTCTCTTTTAACTTCCATTCAATTTTCGTTCGCTCCCACCAATTACTAGCACTCATAA 7962 Query 41775 GCTGTATTTCTTTCGTCATCACATCGTACTTACTGTACATGCTGTCAC 41822 ||||||||||||||||||| || ||||| ||||| ||||||| |||| Sbjct 7963 GCTGTATTTCTTTCGTCATAACGTCGTATTTACTATACATGCGCTCAC 8010 Score = 767 bits (850), Expect = 0.0 Identities = 489/539 (91%), Gaps = 28/539 (5%) Strand=Plus/Plus Query 36445 TAAGAACACTACGAGCTACTGAAAATATATCTGCTACAGGGCGTATGTGGGCGCAAGAAT 36504 |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 3104 TAAGAACATTACGAGCGCAAGAAAATATATCTGCTACAGGACGTATGTGGGCGCAAGAAT 3163 Query 36505 TTATCCCCAATTCTTCTCGTACGCTTAAAATGGACATAGAAGACCTTCCATTCTCTGCTT 36564 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3164 TTATCCCTAATTCTTCTCGTACGCTTAAAACGGACATAGAAGACCTTCCATTCTCTGCTT 3223 Query 36565 TAGATAAAATCAACTCTGTAAACATCAAACAGTATCACTTTATAAGAGATGTTGAACGCT 36624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3224 TAGATAAAATCAACTCTGTAAACATCAAACAGTATCACTTTATAAGAGATGTTGAACGCT 3283 Query 36625 TCGAGTCAGGGGAGTCTATTACACTTCCAATTAATTACGGTATGATTGCGGAGGACACTG 36684 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 3284 TCGAGTCAGGGGAATCTATTACACTACCAATTAATTACGGTATGATTGCGGAGGACTCTG 3343 Query 36685 ACGATGTATTCACCACACCACAGAAAGACGCTATAAAACTTTATAGCTCTGTTGCAATTT 36744 |||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||| Sbjct 3344 ACGATGTATTCACCACACCACAAAAAGACGCTGTAACACTTTATAGCTCGGTTGCAATTT 3403 Query 36745 CTATTCAAGCAATACAAGAAGTTGACTTTAAAGTTGAAAATCTTCAATTTGACCACGGTA 36804 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3404 CTATTCAAGCAATACAAGAAGTTGACTTTAAAGTTAAAAATCTTCAATTTGACCACGGTA 3463 Query 36805 TGTTGAAGCAGGAAGTTGACACTCTTAAAGAACAACTTGAAGCAGAAAAACTTGAGAAGA 36864 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3464 TGTGGAAGCAGGAAGTTGACACTCTTAAAGAACAACTTGAAGCAGAAAAACTTGAGAAAG 3523 Query 36865 TTTCAATGAAAGCTGAAATTGATGAATTAAAGGTATTAGTGCAACAATTACTAAACAAAT 36924 |||||||||||||||||||||||||||||||||||||||| Sbjct 3524 TTTCAATGAAAGCTGAAATTGATGAATTAAAGGTATTAGT-------------------- 3563 Query 36925 AAACCGAAACAACAATTAATAAATGAGAAACCAGAGCAGCCATAAGCTGGTCttttttt 36983 ||||||||||||||||||||||||||||||||||||||||| | ||| ||| Sbjct 3564 --------ACAACAATTAATAAATGAGAAACCAGAGCAGCCATAAGCTGTTTTTTATTT 3614 Score = 105 bits (116), Expect = 2e-18 Identities = 303/461 (66%), Gaps = 10/461 (2%) Strand=Plus/Plus Query 39651 AAAAGGAGATGTTGAATAATGGAAATCAAACAAATGTTAGTGCCAAGAAGTCGATACGAT 39710 ||||||||||||| |||||||||||||| | ||| ||||| ||| ||| | | Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245 Query 39711 GCCTTATGCCCGTATGAGATGAATCCAACAGAAATCACATTTCATAACACGTACAACGAC 39770 | ||||| ||| ||||||||| | || || | || || || || ||||| Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305 Query 39771 GCACCGGCTATAAATGA----GCGTA-ATAATGTCGCTAACAATAGCACTGGAACATCAT 39825 || | || | || || || || || || ||| ||| ||| | | | || | Sbjct 5306 GCTACAGCAAATAACGAAGTGGCTTATATGAT-TCG-TAATGATAACCAAGTA---TCGT 5360 Query 39826 TTCATATCGCTGTGGATGATAAAGAAGCTATTCAGTTAATTCCTTTTAACAGAAATGCAT 39885 ||||||| || || || |||||||||||| | || |||||||| | | || || | Sbjct 5361 TTCATATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTT 5420 Query 39886 GGCACGCTGGAGATGGTAATGGGAGAGGGAATCGTCATAGTATTGGGGTGGAAATTTGTT 39945 |||| || |||||| || | || |||||| | |||||| || ||||| |||| Sbjct 5421 GGCATTGCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTT 5480 Query 39946 ATTCACAATCAGGCGGAGCGAGATATCGCAAGGCTGAATTAAATGCAATTGAAGTAATCG 40005 | || | | || |||| ||||| || || || |||||| | || | | Sbjct 5481 ACTCTCTAAGTGGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAG 5540 Query 40006 CCCAATTAATGATTCAGTTTGATATTCCAATCAGTAAAGTTAAGACTCATCAAGAGAGAA 40065 | | |||| |||| |||||||||| ||||||||| || |||||| | | Sbjct 5541 CTGGGCTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGA 5600 Query 40066 ACGGGAAGTACTGTCCGCATCGAATGTTAGATGAAGGACGT 40106 || ||||| ||||| ||||| ||||||| ||||||||| Sbjct 5601 GTGGAAAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGT 5641 Score = 102 bits (112), Expect = 3e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34674 GGTCTTAAACCAAATAAAACGCTATGGCGTGATATTAGTGGTGGTAAGCCTGGTATTTTG 34733 || |||| ||| |||| || || |||||||||||||| ||| ||||||||||||||| Sbjct 193 GGGCTTAGACCTTATAAGACACTTTGGCGTGATATTAGCAATGGAAAGCCTGGTATTTTG 252 Query 34734 AAAATATGGACAGGTGAAGCGTGGGATGTTGTCGTTCCGGATGTCGAGGAAGTTAA 34789 |||||||||||||| | ||| ||||| ||||| || ||||| || |||||| Sbjct 253 AAAATATGGACAGGCGCAGCTTGGGAATCGGTCGTACCTGATGTTGATTCAGTTAA 308 >seq28673 Length=3150 Score = 390 bits (432), Expect = 4e-104 Identities = 538/753 (71%), Gaps = 17/753 (2%) Strand=Plus/Plus Query 49710 TTTAAAGGTGTTTATACGTTAAAATAAGGAGTGTGAGACCTACATAAAATACTTTTTCAC 49769 |||||| || ||| | | ||||| | |||||| | |||||| ||||||||||| | Sbjct 1793 TTTAAAATTGCTTACAAGCGAAAATGAAAGGTGTGATAGCTACATGAAATACTTTTTAAT 1852 Query 49770 CAAGTATGTATATTCCACTAAGAGGTTTAGTGCTTTCTTTTGTGGTTCTGTGTCTAGTTT 49829 ||||| |||||||| ||||| || || || |||||||||| |||||||| |||| | Sbjct 1853 TAAGTAAGTATATTCGACTAAAAGATTGAGCGCTTTCTTTTTAGGTTCTGTATCTAAATC 1912 Query 49830 AGAAATTTGATCTAATATGACCTCGACTTGTGGTGGTATCCGGTATTCTCTGCCGACCAG 49889 || ||||||||||| ||||| |||| ||||| || || || ||| ||||| || || Sbjct 1913 GGATATTTGATCTAAAATGACTTCGAACTGTGGAGGCATTCGATATGTCCTGCCAACTAG 1972 Query 49890 ATTGTCCAGACTAATGTTATATAGATCAGCAATCTTGATTAGAGTAGAAACGTCAGGTTC 49949 || || || || | || |||| |||| || || || ||||| || || || ||||| Sbjct 1973 GTTATCGAGGCTGACATTGTATATATCACTAAGTTTAATGAGAGTTGATACATCTGGTTC 2032 Query 49950 AGATCTTCCCGCTTCCCAATTGGTATATGTTGAACGAACAACATTAAGATGGTGAGCAAC 50009 ||| | ||| |||||||| || |||||||||||||| |||||||| | | ||| ||| || Sbjct 2033 AGACCGTCCTGCTTCCCAGTTTGTATATGTTGAACGGACAACATTCAAACGGTAAGCGAC 2092 Query 50010 ATCATTTTGAGTAAGTTTGTTTTTCTTTCGAAAGTATATAAGTCGTTCGCTAAGCAATGA 50069 ||||||||| || | |||||||||||| |||||||||| |||||||||||||||||||| Sbjct 2093 ATCATTTTGTGTTAATTTGTTTTTCTTGCGAAAGTATACTAGTCGTTCGCTAAGCAATGA 2152 Query 50070 CTATTCACCGCCCTTTTTTATCTGTGACAATTATAAGCGAACGAGCAAAGTA--AATGGT 50127 |||||||||||||||| | |||| |||||||||||||||||||| ||| |||||| Sbjct 2153 CTATTCACCGCCCTTTATAATCTTCGACAATTATAAGCGAACGAG--TGGTAATAATGGT 2210 Query 50128 ATATATTTGGATAAAACGATTAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 50187 ||||||| | || | ||||||||| Sbjct 2211 ATATATTCGAATGGTATGATTAATTATGTGACCTTTATGTTATGTGAAGATTCATTATGA 2270 Query 50188 NTCATGATAAAAATACTTAGAACAAAAGTTCGATTTTATGGTAATATATGCATGTGAGGT 50247 || || ||||| |||| | |||||| ||| |||||| |||| ||| | | Sbjct 2271 GTCTGTGTAGAAATAAAAGGAACGAGAGTTCGTATTTGTGGTAAAATATTCATACAGGTT 2330 Query 50248 CTTCAAGCG-TTCCATGCATAATTGCATATTTTATT-TTTGTATCGCTTGAGAAACCTTG 50305 | || || | |||||||||||||| ||||||| |||| | | |||| ||| Sbjct 2331 CAAAAAACGATGAAATGCATAATTGCATTTTTTATTCCATGTAATACAT--AAAACGTTG 2388 Query 50306 ATAATAAGGGATTTCTTAATTTTCTCAATAATTGTCTGATAACTGCATGACtgaaatttg 50365 ||| ||| | ||| | ||||||||||||| || || || | | | ||| ||| |||| Sbjct 2389 ATACAAAGCGGTTTTTCAATTTTCTCAATAGTTTTCAGACTATTATACGACAGAATTTTG 2448 Query 50366 ccaaaaatgtgatattatgaaaacaaataaaataaacggacgtgaaaaaaGACCCAC--- 50422 ||| |||| |||||||| ||| |||||| ||||||| ||||||||| ||| Sbjct 2449 GGAAATTTGTGGTATTATGATAAC-AATAAA--AAACGGAACGAAAAAAAGACTCACAGC 2505 Query 50423 -GGTGTAAGTAGTG-CTGGTAACACTCTTACAC 50453 ||||||| |||| | | ||||||||||| Sbjct 2506 GTGTGTAAG-AGTGATTTGGCCCACTCTTACAC 2537 Score = 132 bits (146), Expect = 2e-26 Identities = 90/100 (90%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 49431 TTGTTTCCTCCAGTTATGTAAAATGTAAGATTTCCGAGCCTATCATAGCAAACAATCAAT 49490 || || ||||||||||||||||||||||||||||||||| |||||||||||||| | ||| Sbjct 1223 TTATTACCTCCAGTTATGTAAAATGTAAGATTTCCGAGCTTATCATAGCAAACATTTAAT 1282 Query 49491 TCGAATATTGTCATATTTTGTCGAA-AGAAAATAAAAAAG 49529 | |||||||||||||||||||||| ||||| ||||||| Sbjct 1283 TATAATATTGTCATATTTTGTCGAACAGAAATGAAAAAAG 1322 Score = 122 bits (134), Expect = 3e-23 Identities = 122/154 (79%), Gaps = 7/154 (5%) Strand=Plus/Plus Query 48662 TAAAGAAAAGACACCCAAAGGTGCCTTCCTCCGACTTGATAACCACTTTAATTTTAATAA 48721 |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 173 TAAAGAAAAGACACCCTAAGGTGCCTTCCTTCGACTTGATAACCACTTTAATTTTAATAA 232 Query 48722 TATGAGTGTT----GGATTCTCATCCAATATC-ATTATATCACATTATAGAATGTTAGAA 48776 ||| ||| | || || | ||||| | ||| || || ||| || ||| Sbjct 233 CGAGAGAGTTAATAGAATACT-ACCCAATTCCTATTTTACCATATTTATCTATATTA-TT 290 Query 48777 GATTGAGAAAAAAGAAAAGCACTCTTTCGAGTGC 48810 ||||||||| || |||||||||||||||||||| Sbjct 291 CATTGAGAAATAATAAAAGCACTCTTTCGAGTGC 324 >seq3 Length=4151 Score = 109 bits (120), Expect = 2e-19 Identities = 73/80 (91%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 16799 ATTAAATCAATAGCAATTATCGTAGGCGCTGCTGTGATCTTGGTGGTGTCTTGTTTGTTG 16858 |||||| ||||||||||||||||||||||| | |||||| ||| || ||||||||||||| Sbjct 2363 ATTAAACCAATAGCAATTATCGTAGGCGCTTCCGTGATC-TGGGGGCGTCTTGTTTGTTG 2421 Query 16859 TTAAGGAAAGATAAGCGAAA 16878 ||||||||||||||||| || Sbjct 2422 TTAAGGAAAGATAAGCGCAA 2441 Score = 102 bits (112), Expect = 3e-17 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 17673 TATTCATTTCCCTGCATAAATTAGTTTTCGTTATGGATTTTTTAAAATATGATTCTTTTT 17732 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 3195 TATTCATTTCCCTGCATAAATTAGTTTTCGTTATGGATTTTTCAAAATAAGATTCTTTTT 3254 Query 17733 G 17733 | Sbjct 3255 G 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169713607062324