Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq26443 100 2e-16 seq14506 98.7 7e-16 seq756 93.3 3e-14 seq6888 89.7 4e-13 seq9418 84.2 2e-11 seq37694 82.4 5e-11 seq247 82.4 5e-11 >seq26443 Length=10536 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 |||| || | ||| |||||||| || || || |||||||||||| | | | || Sbjct 9061 CTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCG 9120 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | || || |||||| | ||||| | ||| ||||| || ||||| |||||| Sbjct 9121 TCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTG 9180 Query 15082 TCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 || || ||||| || || | || || || || || | || || || ||||| || Sbjct 9181 TCCTGGATCTTTGC-CTTGACGTTGTCGATGGTGTCACTGCTCTCCACCTCCAAGGTGAT 9239 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || |||||||| || ||||| ||||||||| Sbjct 9240 GGTCTTGCCGGTCAGAGTCTTCACAAAGATTTGCATA 9276 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || |||||||| || ||| | || |||| || | || Sbjct 8845 TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCCAGAGTCCTGCCGTCCTCCAGCTGC 8904 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| | ||| ||||| ||| || ||||||||||| |||||| Sbjct 8905 TTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGTATCCCTTCCTTGTCTTGGATTTTG 8964 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || ||||| | || || || | ||| ||||| || || ||| Sbjct 8965 GCCTTGACATTGTCAATGGTGTCGCTGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTC 9024 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||||||| Sbjct 9025 AGGGTCTTGACGAAGATTTGCATA 9048 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||| || ||| | || |||| || | || Sbjct 8617 TGGAGGGTGGACTCATTCTGGATGTTGTAGTCCGCCAGAGTCCTTCCGTCCTCCAGCTGC 8676 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | ||||| | ||| ||||| ||| || ||||||||||| |||||| Sbjct 8677 TTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGTATCCCTTCCTTGTCTTGGATTTTG 8736 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || ||||| | || || || || || || || || || ||| Sbjct 8737 GGCTTGACATTGTCAATGGTGTCGCTGCTCTCCACCTCCAAAGTGATTGTCTTTCCGGTC 8796 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 8797 AGGGTCTTGACAAAGATCTGCAT 8819 >seq14506 Length=85774 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | | || || || || ||||| || ||||| ||||||||||| | ||| Sbjct 52175 CCTCCTCGAAGACGTAGCACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGT--CTG 52232 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | ||| | ||||| | ||||| || || | ||||| | || ||||| || Sbjct 52233 CCAATGTCCTCCCATCTTCAAGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTG 52292 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || || |||||||| || ||||| || || | || || ||||| | | || Sbjct 52293 GGATCCCCTCCTTGTCTTGTATCTTTGC-CTTCACGTTATCGATGGTATCTGAACTCTCA 52351 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||| ||||||||||| || ||||| ||||||||| Sbjct 52352 ACCTCCAAAGTTATGGTTTTCCCTGTCAGAGTCTTCACAAAGATTTGCATA 52402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || || || ||||| || || || | ||| | || || Sbjct 52648 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTCCTCCCATCCTC 52707 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || || | |||| || ||||| || ||||| || |||||||| Sbjct 52708 GAGCTGCTTTCCTGCAAAGATCAGCCGTTGTTGATCTGGGGGAATGCCCTCCTTGTCTTG 52767 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || || ||| | | || || || ||||||||||| || Sbjct 52768 TATCTTGGCCTTGACATTGTCGATTGTGTCGGAACTCTCAACCTCCAAGGTAATGGTCTT 52827 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| ||||| |||||||| Sbjct 52828 TCCAGTCAGAGTTTTCACAAAGATTTGCAT 52857 >seq756 Length=57245 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| | | || || || || ||||| || ||||| ||||||||||| | ||| Sbjct 50694 CCTCCTCGAAGACGTAGCACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGT--CTG 50751 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | ||| | ||||| | ||||| || || | ||||| | || ||||| || Sbjct 50752 CCAATGTCCTCCCATCTTCAAGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTG 50811 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || || |||||||| || ||||| || || | || || ||||| | | || Sbjct 50812 GGATCCCCTCCTTGTCTTGTATCTTTGC-CTTCACGTTATCGATGGTATCTGAACTCTCA 50870 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||| ||||||||||| || ||||| |||| |||| Sbjct 50871 ACCTCCAAAGTTATGGTTTTCCCTGTCAGAGTCTTCACAAAGATTTACATA 50921 >seq6888 Length=12617 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || || |||| |||||| ||||| || | | ||||||||||||| Sbjct 7235 ATGCAAGGTGGACTCCTTTTAGATGTTGCAATCGGCAAGGGTACGGCCGTCTTCTAATTG 7294 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| || | || | | || ||||| || || || ||||| || ||| || Sbjct 7295 TTTGCCCGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGAATCTT 7354 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || ||||| ||| | |||| || || ||||| || || || || || Sbjct 7355 GGGTTTGACATTATCAATAGTGTCGGAACTTTCAACCTCCAAGGTGATTGTCTTGCCGGT 7414 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || |||||||| Sbjct 7415 TAGAGTCTTGACGAAGATTTGCAT 7438 >seq9418 Length=21897 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || |||||||||||| | | | | ||||||| | || Sbjct 11298 TGAAGGGTTGATTCCTTCTGAATGTTGTAATCGGCCAAAGTACGGCCGTCTTCCAGCTGC 11239 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| | ||| ||||| || |||||||||||||| || || Sbjct 11238 TTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTA 11179 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| || | || || || ||||| | || || || | ||| ||||| || || ||| Sbjct 11178 GCTTTCACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 11119 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | || || ||||| || |||||| Sbjct 11118 AAGGTCTTGACAAAGATCTGCATA 11095 >seq37694 Length=247 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || || || || ||||| || || || || || | | | ||||| Sbjct 2 AACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTC 61 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| |||||||| | |||| | || ||||| || ||||| |||||||| Sbjct 62 AAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTG 121 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || || | || || || ||| ||||||| || | || ||||| || Sbjct 122 AATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 181 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| |||||||| Sbjct 182 TCCAGTGAGAGTTTTTACAAAGATTTGCAT 211 >seq247 Length=47399 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || || || || ||||| || || || || || | | | ||||| Sbjct 33444 AACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTC 33503 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| |||||||| | |||| | || ||||| || ||||| |||||||| Sbjct 33504 AAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTG 33563 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || || | || || || ||| ||||||| || | || ||||| || Sbjct 33564 AATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 33623 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| |||||||| Sbjct 33624 TCCAGTGAGAGTTTTTACAAAGATTTGCAT 33653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357181196461145