Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq26443 100 2e-16
seq14506 98.7 7e-16
seq756 93.3 3e-14
seq6888 89.7 4e-13
seq9418 84.2 2e-11
seq37694 82.4 5e-11
seq247 82.4 5e-11
>seq26443
Length=10536
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021
|||| || | ||| |||||||| || || || |||||||||||| | | | ||
Sbjct 9061 CTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCG 9120
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
||||| | || || |||||| | ||||| | ||| ||||| || ||||| ||||||
Sbjct 9121 TCTTCCAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTG 9180
Query 15082 TCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140
|| || ||||| || || | || || || || || | || || || ||||| ||
Sbjct 9181 TCCTGGATCTTTGC-CTTGACGTTGTCGATGGTGTCACTGCTCTCCACCTCCAAGGTGAT 9239
Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||| || || |||||||| || ||||| |||||||||
Sbjct 9240 GGTCTTGCCGGTCAGAGTCTTCACAAAGATTTGCATA 9276
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|||||||| || || || || |||||||| || ||| | || |||| || | ||
Sbjct 8845 TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCCAGAGTCCTGCCGTCCTCCAGCTGC 8904
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || || | ||||| | ||| ||||| ||| || ||||||||||| ||||||
Sbjct 8905 TTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGTATCCCTTCCTTGTCTTGGATTTTG 8964
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || || || ||||| | || || || | ||| ||||| || || |||
Sbjct 8965 GCCTTGACATTGTCAATGGTGTCGCTGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTC 9024
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
|| || || || || |||||||||
Sbjct 9025 AGGGTCTTGACGAAGATTTGCATA 9048
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || || |||||||| || ||| | || |||| || | ||
Sbjct 8617 TGGAGGGTGGACTCATTCTGGATGTTGTAGTCCGCCAGAGTCCTTCCGTCCTCCAGCTGC 8676
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || || | ||||| | ||| ||||| ||| || ||||||||||| ||||||
Sbjct 8677 TTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGTATCCCTTCCTTGTCTTGGATTTTG 8736
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || || || ||||| | || || || || || || || || || |||
Sbjct 8737 GGCTTGACATTGTCAATGGTGTCGCTGCTCTCCACCTCCAAAGTGATTGTCTTTCCGGTC 8796
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| || |||||
Sbjct 8797 AGGGTCTTGACAAAGATCTGCAT 8819
>seq14506
Length=85774
Score = 98.7 bits (108), Expect = 7e-16
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| ||||| | | || || || || ||||| || ||||| ||||||||||| | |||
Sbjct 52175 CCTCCTCGAAGACGTAGCACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGT--CTG 52232
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| | ||| | ||||| | ||||| || || | ||||| | || ||||| ||
Sbjct 52233 CCAATGTCCTCCCATCTTCAAGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTG 52292
Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
| || || |||||||| || ||||| || || | || || ||||| | | ||
Sbjct 52293 GGATCCCCTCCTTGTCTTGTATCTTTGC-CTTCACGTTATCGATGGTATCTGAACTCTCA 52351
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || || |||||||| ||||||||||| || ||||| |||||||||
Sbjct 52352 ACCTCCAAAGTTATGGTTTTCCCTGTCAGAGTCTTCACAAAGATTTGCATA 52402
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || |||||||| || || || || ||||| || || || | ||| | || ||
Sbjct 52648 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCCAGGGTCCTCCCATCCTC 52707
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| || || || || | |||| || ||||| || ||||| || ||||||||
Sbjct 52708 GAGCTGCTTTCCTGCAAAGATCAGCCGTTGTTGATCTGGGGGAATGCCCTCCTTGTCTTG 52767
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| ||| || ||| | || || || ||| | | || || || ||||||||||| ||
Sbjct 52768 TATCTTGGCCTTGACATTGTCGATTGTGTCGGAACTCTCAACCTCCAAGGTAATGGTCTT 52827
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||||||||| ||||| ||||||||
Sbjct 52828 TCCAGTCAGAGTTTTCACAAAGATTTGCAT 52857
>seq756
Length=57245
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| ||||| | | || || || || ||||| || ||||| ||||||||||| | |||
Sbjct 50694 CCTCCTCGAAGACGTAGCACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGT--CTG 50751
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| | ||| | ||||| | ||||| || || | ||||| | || ||||| ||
Sbjct 50752 CCAATGTCCTCCCATCTTCAAGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTG 50811
Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
| || || |||||||| || ||||| || || | || || ||||| | | ||
Sbjct 50812 GGATCCCCTCCTTGTCTTGTATCTTTGC-CTTCACGTTATCGATGGTATCTGAACTCTCA 50870
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || || |||||||| ||||||||||| || ||||| |||| ||||
Sbjct 50871 ACCTCCAAAGTTATGGTTTTCCCTGTCAGAGTCTTCACAAAGATTTACATA 50921
>seq6888
Length=12617
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| | ||| || || |||| |||||| ||||| || | | |||||||||||||
Sbjct 7235 ATGCAAGGTGGACTCCTTTTAGATGTTGCAATCGGCAAGGGTACGGCCGTCTTCTAATTG 7294
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|||||| || | || | | || ||||| || || || ||||| || ||| ||
Sbjct 7295 TTTGCCCGCAAAGATGAGCCTTTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGAATCTT 7354
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| ||| ||| | || ||||| ||| | |||| || || ||||| || || || || ||
Sbjct 7355 GGGTTTGACATTATCAATAGTGTCGGAACTTTCAACCTCCAAGGTGATTGTCTTGCCGGT 7414
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
||||| || || || ||||||||
Sbjct 7415 TAGAGTCTTGACGAAGATTTGCAT 7438
>seq9418
Length=21897
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|||||||| || || || || |||||||||||| | | | | ||||||| | ||
Sbjct 11298 TGAAGGGTTGATTCCTTCTGAATGTTGTAATCGGCCAAAGTACGGCCGTCTTCCAGCTGC 11239
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | |||| | ||| ||||| || |||||||||||||| || ||
Sbjct 11238 TTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTA 11179
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| || | || || || ||||| | || || || | ||| ||||| || || |||
Sbjct 11178 GCTTTCACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 11119
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
| || || ||||| || ||||||
Sbjct 11118 AAGGTCTTGACAAAGATCTGCATA 11095
>seq37694
Length=247
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| ||||| || || || || ||||| || || || || || | | | |||||
Sbjct 2 AACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTC 61
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||| |||||||| | |||| | || ||||| || ||||| ||||||||
Sbjct 62 AAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTG 121
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|||||| || || | || || || ||| ||||||| || | || ||||| ||
Sbjct 122 AATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 181
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || |||||||||||||| ||||||||
Sbjct 182 TCCAGTGAGAGTTTTTACAAAGATTTGCAT 211
>seq247
Length=47399
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| ||||| || || || || ||||| || || || || || | | | |||||
Sbjct 33444 AACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTC 33503
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||| |||||||| | |||| | || ||||| || ||||| ||||||||
Sbjct 33504 AAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTG 33563
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|||||| || || | || || || ||| ||||||| || | || ||||| ||
Sbjct 33564 AATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 33623
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || |||||||||||||| ||||||||
Sbjct 33624 TCCAGTGAGAGTTTTTACAAAGATTTGCAT 33653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357181196461145
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