Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 127 3e-24
seq13309 118 1e-21
seq11108 100 3e-16
seq25823 91.5 2e-13
>seq26787
Length=21907
Score = 127 bits (140), Expect = 3e-24
Identities = 374/567 (66%), Gaps = 11/567 (2%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| ||||| ||||| || ||||| || || || |||||| ||| || ||||| | ||
Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||||| ||||||||| | || || || |||||||||||||| || || ||
Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710
|||||||| | || ||||| |||||||| | | | || | ||| |||| |||
Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGA-CTCCCCGCCG--TCGATCCATTTCAACGC 16488
Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGAT--CGCTTCAAAGAGTTCCTTC 127768
|||||| ||||| ||| ||| || || | |||| ||| ||| |||| | |||
Sbjct 16489 CCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGATTGCGCGGAAAAG-GCGGCTT- 16546
Query 127769 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACC 127828
|||||| | ||| |||||||| | || | || || | ||| ||| |
Sbjct 16547 TTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATG 16606
Query 127829 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888
| ||| | | ||| | ||||||| | ||||| ||| || ||| ||||| |
Sbjct 16607 TTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCTACCTGGACCTCCTTC 16666
Query 127889 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGG 127948
||| || || |||||| | || || || ||||| | || || || || |||
Sbjct 16667 ATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGG 16726
Query 127949 ATATACTTTATGAATTTCTGTTCATTCTC-GTTCAGG-GTCTTCCAGTCGTCGAGATCCT 128006
| | | | ||||| | | || | | ||| ||| ||| ||||| | | ||||
Sbjct 16727 ACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTC--CCAGTGGCGAACGTCCT 16784
Query 128007 TTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCCC 128066
||||||||||||||||| || ||||| | || ||| ||||| || | ||||
Sbjct 16785 GAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCTTTCTTGTACATCTCCC 16844
Query 128067 AGAGGTGGGGATACTTCAGGGGGAACA 128093
||| || || || | | |||||||
Sbjct 16845 AGATCTGAGGGTATTCAATTGGGAACA 16871
>seq13309
Length=30306
Score = 118 bits (130), Expect = 1e-21
Identities = 145/196 (74%), Gaps = 3/196 (2%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| || || ||||| || ||||| || || ||||||||| || || ||||| | ||
Sbjct 6356 GTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCC 6297
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||||| ||||||||||| || || || |||||||||||||| || || ||
Sbjct 6296 GCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCA 6237
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710
|||||||||| || | |||||||||| | | | | || | ||| |||| |||
Sbjct 6236 GGCGAACGCAATCAGCCTCTCGGCAAAGCA-CTCCCCGCCG--TCGATCCATTTCAACGC 6180
Query 127711 CCACTGTGCCTTTTTC 127726
|||||| ||||| |||
Sbjct 6179 CCACTGCGCCTTCTTC 6164
>seq11108
Length=39206
Score = 100 bits (110), Expect = 3e-16
Identities = 231/341 (68%), Gaps = 14/341 (4%)
Strand=Plus/Plus
Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 12790
||||||||| || | ||| || || || | |||| || ||| || |||| ||
Sbjct 4666 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 4722
Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848
||| || ||||||||||| || || || || | ||| || || | || ||||| | |
Sbjct 4723 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 4782
Query 12849 GGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907
| || | ||| | | || |||| | || || || |||||||| |||| || || ||
Sbjct 4783 GCCAATGCCAGCTCCTCT---TTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 4839
Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967
||||| || || || || |||| || || |||| |||||||||||
Sbjct 4840 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 4899
Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 13026
||||||||||| ||||| | || | | | | |||| | ||| |||||| | ||||
Sbjct 4900 AACAAACATCTCGACAAATTCGGAGCCAG-ATATTGAAAAGAATGGGACGCCAGCCTCAC 4958
Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067
| || |||||| || || ||||||||||| ||||| |||
Sbjct 4959 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 4999
>seq25823
Length=50596
Score = 91.5 bits (100), Expect = 2e-13
Identities = 228/341 (67%), Gaps = 14/341 (4%)
Strand=Plus/Minus
Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 12790
||||||||| || | ||| || || || | |||| || ||| || |||| ||
Sbjct 44494 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 44438
Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850
||| || ||||||||||| || || || || | ||| || || | || ||||| |
Sbjct 44437 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 44378
Query 12851 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907
|||| || || | | |||| | || || || |||||||| |||| || || ||
Sbjct 44377 ---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 44321
Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967
||||| || || || || |||| || || |||| |||||||||||
Sbjct 44320 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 44261
Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGAT-GAAGGGGACGTTGGATTCAC 13026
||||||||||| ||||| | || | | || |||| | ||| || ||| | ||||
Sbjct 44260 AACAAACATCTCGACAAATTCGGAGCCAGAT-ATTGAAAAGAATGGAACGCCAGCCTCAC 44202
Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067
| || |||||| || || ||||||||||| ||||| |||
Sbjct 44201 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 44161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613136051150520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |