Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq26787 127 3e-24 seq13309 118 1e-21 seq11108 100 3e-16 seq25823 91.5 2e-13 >seq26787 Length=21907 Score = 127 bits (140), Expect = 3e-24 Identities = 374/567 (66%), Gaps = 11/567 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||| ||||| || ||||| || || || |||||| ||| || ||||| | || Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| ||||||||| | || || || |||||||||||||| || || || Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||||| | || ||||| |||||||| | | | || | ||| |||| ||| Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGA-CTCCCCGCCG--TCGATCCATTTCAACGC 16488 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGAT--CGCTTCAAAGAGTTCCTTC 127768 |||||| ||||| ||| ||| || || | |||| ||| ||| |||| | ||| Sbjct 16489 CCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGATTGCGCGGAAAAG-GCGGCTT- 16546 Query 127769 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACC 127828 |||||| | ||| |||||||| | || | || || | ||| ||| | Sbjct 16547 TTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATG 16606 Query 127829 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 | ||| | | ||| | ||||||| | ||||| ||| || ||| ||||| | Sbjct 16607 TTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCTACCTGGACCTCCTTC 16666 Query 127889 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGG 127948 ||| || || |||||| | || || || ||||| | || || || || ||| Sbjct 16667 ATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGG 16726 Query 127949 ATATACTTTATGAATTTCTGTTCATTCTC-GTTCAGG-GTCTTCCAGTCGTCGAGATCCT 128006 | | | | ||||| | | || | | ||| ||| ||| ||||| | | |||| Sbjct 16727 ACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTC--CCAGTGGCGAACGTCCT 16784 Query 128007 TTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCCC 128066 ||||||||||||||||| || ||||| | || ||| ||||| || | |||| Sbjct 16785 GAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCTTTCTTGTACATCTCCC 16844 Query 128067 AGAGGTGGGGATACTTCAGGGGGAACA 128093 ||| || || || | | ||||||| Sbjct 16845 AGATCTGAGGGTATTCAATTGGGAACA 16871 >seq13309 Length=30306 Score = 118 bits (130), Expect = 1e-21 Identities = 145/196 (74%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| || || ||||||||| || || ||||| | || Sbjct 6356 GTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCC 6297 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| ||||||||||| || || || |||||||||||||| || || || Sbjct 6296 GCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCA 6237 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||||||| || | |||||||||| | | | | || | ||| |||| ||| Sbjct 6236 GGCGAACGCAATCAGCCTCTCGGCAAAGCA-CTCCCCGCCG--TCGATCCATTTCAACGC 6180 Query 127711 CCACTGTGCCTTTTTC 127726 |||||| ||||| ||| Sbjct 6179 CCACTGCGCCTTCTTC 6164 >seq11108 Length=39206 Score = 100 bits (110), Expect = 3e-16 Identities = 231/341 (68%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 12790 ||||||||| || | ||| || || || | |||| || ||| || |||| || Sbjct 4666 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 4722 Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848 ||| || ||||||||||| || || || || | ||| || || | || ||||| | | Sbjct 4723 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 4782 Query 12849 GGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 | || | ||| | | || |||| | || || || |||||||| |||| || || || Sbjct 4783 GCCAATGCCAGCTCCTCT---TTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 4839 Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||||| || || || || |||| || || |||| ||||||||||| Sbjct 4840 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 4899 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 13026 ||||||||||| ||||| | || | | | | |||| | ||| |||||| | |||| Sbjct 4900 AACAAACATCTCGACAAATTCGGAGCCAG-ATATTGAAAAGAATGGGACGCCAGCCTCAC 4958 Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 | || |||||| || || ||||||||||| ||||| ||| Sbjct 4959 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 4999 >seq25823 Length=50596 Score = 91.5 bits (100), Expect = 2e-13 Identities = 228/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 12790 ||||||||| || | ||| || || || | |||| || ||| || |||| || Sbjct 44494 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 44438 Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||| || ||||||||||| || || || || | ||| || || | || ||||| | Sbjct 44437 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 44378 Query 12851 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 |||| || || | | |||| | || || || |||||||| |||| || || || Sbjct 44377 ---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 44321 Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||||| || || || || |||| || || |||| ||||||||||| Sbjct 44320 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 44261 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGAT-GAAGGGGACGTTGGATTCAC 13026 ||||||||||| ||||| | || | | || |||| | ||| || ||| | |||| Sbjct 44260 AACAAACATCTCGACAAATTCGGAGCCAGAT-ATTGAAAAGAATGGAACGCCAGCCTCAC 44202 Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 | || |||||| || || ||||||||||| ||||| ||| Sbjct 44201 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 44161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613136051150520