Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5564 89.7 4e-13 seq247 89.7 4e-13 seq25669 82.4 5e-11 >seq5564 Length=26244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| |||||| |||||||| | || ||||| || || || || || ||| Sbjct 5343 CCTCCTCGCAGACGCAGGACCAAATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCTGCC 5284 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| || | || ||||| ||||||| || | ||||||||||| ||| Sbjct 5283 AAAGTCCTCCCATCCTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCCGGGGGA 5224 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| || ||| || | | | | || |||| || || || Sbjct 5223 ATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCGACC 5164 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | || || |||||||| ||||| Sbjct 5163 TCCAAAGTAATGGTCTTCCCAGTCAGTGTCTTCACGAAGATTTGCAT 5117 >seq247 Length=47399 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || |||| |||||| ||| |||||| || || ||||| || |||| || || Sbjct 33895 CGAAGGACCAGATGCAATGTGGATTCTTTCTGGATGTTATAGTCAGCCAGGGTTCGGCCA 33954 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || ||||| |||| || | | |||||| || | || | || || ||| Sbjct 33955 TCTTCAAGCTGCTTCCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTG 34014 Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || ||||| ||||| ||| | | | ||||||| |||||| || ||||| || || Sbjct 34015 TCCTGAATTTTGGCTTTAA-CGTTGTCGATGGTGTCTGAGCTTTCAACCTCCAAGGTGAT 34073 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || || | ||| || || ||||||||||| Sbjct 34074 TGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 34109 >seq25669 Length=30460 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 |||||||| ||| | ||| ||| || || ||||| |||||||||| ||| |||| Sbjct 1279 CAGTACCAGATGGAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAGGGTGCGGCCATC 1338 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || | || || ||| | ||||| || ||||||||||||| || | ||||| ||||| Sbjct 1339 CTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGATCCGGAGGAATTCCTTCCTTGTC 1398 Query 39627 GCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 || ||| || | ||| | | | ||| || || || || || | |||||| | Sbjct 1399 CTGGATCTTTGCCTTCA-CGTTGTCGATTGTTTCATAACTCTCAACCTCGAGAGTAATCG 1457 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || | || || || ||||||||||| Sbjct 1458 TCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 1491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347164708057901