Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 118 1e-21
seq11108 116 5e-21
seq25823 114 2e-20
seq23783 109 7e-19
seq13309 96.9 4e-15
seq3669 95.1 2e-14
>seq26787
Length=21907
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
|||||||||||||| || | || || || || || || || ||||||||||| || |
Sbjct 16461 TCCTTTGCTGAGCGGCTGATAGCGTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 16402
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||| | |||| ||||| ||||||||||| | ||||| || || ||||||||||
Sbjct 16401 TTCTGCTCAATTTTCTGGCTGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAAC 16342
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
||||| ||||| || ||||| || || |||
Sbjct 16341 GAGCTGATCTCGCGAGACGAAGGTCTGCAC 16312
>seq11108
Length=39206
Score = 116 bits (128), Expect = 5e-21
Identities = 251/370 (68%), Gaps = 9/370 (2%)
Strand=Plus/Plus
Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031
|| ||||| |||||||| || ||||||||||| | || || || | || ||||| ||
Sbjct 4721 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 4780
Query 16032 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| ||||| | | |||| |||| || |||||||| ||||||| || || |||
Sbjct 4781 CCGCCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATG 4840
Query 16092 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151
|| || || || || || ||||| || ||||| || || || ||||||
Sbjct 4841 CACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCA 4900
Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210
||||||||||| ||||| || | || | |||| | ||| ||||| || |||||
Sbjct 4901 ACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGGACGCCAGCCTCACC 4959
Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270
||||||||| || ||||| ||||| || || || || ||| || || ||||
Sbjct 4960 AGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAACACC 5019
Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCACA 16328
| ||||| || ||| | |||| |||||||||| | |||||| || ||||||
Sbjct 5020 TTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACA 5077
Query 16329 ATCTCTTCCA 16338
| ||||||
Sbjct 5078 A---CTTCCA 5084
>seq25823
Length=50596
Score = 114 bits (126), Expect = 2e-20
Identities = 253/373 (68%), Gaps = 15/373 (4%)
Strand=Plus/Minus
Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031
|| ||||| |||||||| || ||||||||||| | || || || | || ||||| ||
Sbjct 44439 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 44380
Query 16032 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088
|||| ||||| | | |||| |||| || |||||||| ||||||| || ||
Sbjct 44379 CC---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACT 44323
Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148
||||| || || || || || ||||| || ||||| || || || |||
Sbjct 44322 ATGCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACA 44263
Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207
|||||||||||||| ||||| || | || | |||| | ||| || || || ||
Sbjct 44262 CCAACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGAACGCCAGCCTC 44204
Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267
||| ||||||||| || ||||| ||||| || || || || ||| || || |
Sbjct 44203 ACCAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAAC 44144
Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCC 16325
|||| ||||| || ||| | |||| |||||||||| | |||||| || |||
Sbjct 44143 ACCTTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCC 44086
Query 16326 ACAATCTCTTCCA 16338
|||| ||||||
Sbjct 44085 ACAA---CTTCCA 44076
>seq23783
Length=11624
Score = 109 bits (120), Expect = 7e-19
Identities = 229/339 (68%), Gaps = 12/339 (4%)
Strand=Plus/Plus
Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTG--TTTCGTTATCA 15974
|||||| | ||| |||||||| || || | |||| || ||| | || | | | |
Sbjct 5309 ATCAAGAACATCCGGCCGATTCGTAGCAGCCAACACAATAACACCCGAATTCCCTGA--A 5366
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|| |||||||| || ||||| ||||| |||||||| ||||||| ||||||||| |
Sbjct 5367 AATCCATCCATTTCAGTCAACAGCTGATTAATAGTCTGTTCCCTTTCATCATTTCCACCA 5426
Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094
| |||||| | | ||| | || || |||||||||||||||||||| || |||||
Sbjct 5427 CCAAGACCAGCTCCTCTCTGCCTCCCTACAGCATCAATCTCATCAATGAACACAATGCAA 5486
Query 16095 GG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150
|| ||| ||| ||| ||||| | |||||| || | || || || ||
Sbjct 5487 GGAGCCTTGGATTT----AGCCTTCTCAAACAAATCCCGGACCCTAGAAGCCCCAACTCC 5542
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210
||||||| ||||||||| | | || | || || |||||| | || ||
Sbjct 5543 CACAAACAGCTCCACAAACTCCGAAGCCGCGCAAGAGAAGAAGGGAGTTCCCGCCTCTCC 5602
Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
|| | |||| || ||||| ||||||||||| || ||
Sbjct 5603 GGCGACCGCTCTCGCCAGAAGCGTCTTACCCGTCCCCGG 5641
>seq13309
Length=30306
Score = 96.9 bits (106), Expect = 4e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
|||||| ||| | || | || || || || ||||| || ||||||||||| || |||
Sbjct 6209 CTTTGCCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTT 6268
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
|||| | |||| ||||| |||||||| || | ||||| || | |||||| |||||
Sbjct 6269 CTGCTCGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGA 6328
Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320
||| ||||| || ||||| || || |||
Sbjct 6329 GCTGATCTCGCGAGACGAAGGCCTGCAC 6356
>seq3669
Length=12011
Score = 95.1 bits (104), Expect = 2e-14
Identities = 245/366 (67%), Gaps = 8/366 (2%)
Strand=Plus/Minus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| |||||||| || ||||| ||||| || ||||| ||||||| ||||||||| |
Sbjct 4327 AAACCCATCCATTTCGGTCAACAGCTGATTTATAGTCTGTTCCCTTTCATCATTTCCA-- 4270
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| ||| ||||| | | ||| | ||||| ||||||||||| |||||||| || |||
Sbjct 4269 CCGCCCATTCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCGTCAATGAACACAATG 4210
Query 16092 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150
|| || | ||| | ||| ||||| | ||||| || | | || || || ||
Sbjct 4209 CAAGG-AGCTTTCGACTTAGCCTTCTCAAACAAATCCCTAACCCTCGAAGCTCCAACCCC 4151
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210
||||||| |||||| || | | || | || || ||| || | || ||
Sbjct 4150 GACAAACAGCTCCACGAATTCCGAAGCAGCGCAGGAGAAGAAAGGAGTCCCCGCCTCTCC 4091
Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270
|| | ||||| || ||||| || || || ||||| ||| || | | | ||||
Sbjct 4090 GGCCACGGCTCTTGCCAGAAGCGTTTTCCCGGTACCGGGCGGGCCGACTAACA-AACACC 4032
Query 16271 TCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329
| | |||||||| || || | || ||| | || || | |||||| ||||||||||
Sbjct 4031 CCTTCGGAATCTTAGCTCCCAATGCAGTGTACTTATCCGGGTTCTTAAGGAAATCCACAA 3972
Query 16330 TCTCTT 16335
|||||
Sbjct 3971 CCTCTT 3966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620366874125840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |