Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq26787 118 1e-21 seq11108 116 5e-21 seq25823 114 2e-20 seq23783 109 7e-19 seq13309 96.9 4e-15 seq3669 95.1 2e-14 >seq26787 Length=21907 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 |||||||||||||| || | || || || || || || || ||||||||||| || | Sbjct 16461 TCCTTTGCTGAGCGGCTGATAGCGTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 16402 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||| | |||| ||||| ||||||||||| | ||||| || || |||||||||| Sbjct 16401 TTCTGCTCAATTTTCTGGCTGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAAC 16342 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || ||||| || || ||| Sbjct 16341 GAGCTGATCTCGCGAGACGAAGGTCTGCAC 16312 >seq11108 Length=39206 Score = 116 bits (128), Expect = 5e-21 Identities = 251/370 (68%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 || ||||| |||||||| || ||||||||||| | || || || | || ||||| || Sbjct 4721 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 4780 Query 16032 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||||| | | |||| |||| || |||||||| ||||||| || || ||| Sbjct 4781 CCGCCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATG 4840 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || || || || || || ||||| || ||||| || || || |||||| Sbjct 4841 CACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCA 4900 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| || | || | |||| | ||| ||||| || ||||| Sbjct 4901 ACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGGACGCCAGCCTCACC 4959 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||||||| || ||||| ||||| || || || || ||| || || |||| Sbjct 4960 AGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAACACC 5019 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCACA 16328 | ||||| || ||| | |||| |||||||||| | |||||| || |||||| Sbjct 5020 TTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACA 5077 Query 16329 ATCTCTTCCA 16338 | |||||| Sbjct 5078 A---CTTCCA 5084 >seq25823 Length=50596 Score = 114 bits (126), Expect = 2e-20 Identities = 253/373 (68%), Gaps = 15/373 (4%) Strand=Plus/Minus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 || ||||| |||||||| || ||||||||||| | || || || | || ||||| || Sbjct 44439 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 44380 Query 16032 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 |||| ||||| | | |||| |||| || |||||||| ||||||| || || Sbjct 44379 CC---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACT 44323 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||||| || || || || || ||||| || ||||| || || || ||| Sbjct 44322 ATGCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACA 44263 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 |||||||||||||| ||||| || | || | |||| | ||| || || || || Sbjct 44262 CCAACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGAACGCCAGCCTC 44204 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| ||||||||| || ||||| ||||| || || || || ||| || || | Sbjct 44203 ACCAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAAC 44144 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCC 16325 |||| ||||| || ||| | |||| |||||||||| | |||||| || ||| Sbjct 44143 ACCTTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCC 44086 Query 16326 ACAATCTCTTCCA 16338 |||| |||||| Sbjct 44085 ACAA---CTTCCA 44076 >seq23783 Length=11624 Score = 109 bits (120), Expect = 7e-19 Identities = 229/339 (68%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTG--TTTCGTTATCA 15974 |||||| | ||| |||||||| || || | |||| || ||| | || | | | | Sbjct 5309 ATCAAGAACATCCGGCCGATTCGTAGCAGCCAACACAATAACACCCGAATTCCCTGA--A 5366 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||| ||||| |||||||| ||||||| ||||||||| | Sbjct 5367 AATCCATCCATTTCAGTCAACAGCTGATTAATAGTCTGTTCCCTTTCATCATTTCCACCA 5426 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | |||||| | | ||| | || || |||||||||||||||||||| || ||||| Sbjct 5427 CCAAGACCAGCTCCTCTCTGCCTCCCTACAGCATCAATCTCATCAATGAACACAATGCAA 5486 Query 16095 GG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || ||| ||| ||| ||||| | |||||| || | || || || || Sbjct 5487 GGAGCCTTGGATTT----AGCCTTCTCAAACAAATCCCGGACCCTAGAAGCCCCAACTCC 5542 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||||| ||||||||| | | || | || || |||||| | || || Sbjct 5543 CACAAACAGCTCCACAAACTCCGAAGCCGCGCAAGAGAAGAAGGGAGTTCCCGCCTCTCC 5602 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || | |||| || ||||| ||||||||||| || || Sbjct 5603 GGCGACCGCTCTCGCCAGAAGCGTCTTACCCGTCCCCGG 5641 >seq13309 Length=30306 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||| ||| | || | || || || || ||||| || ||||||||||| || ||| Sbjct 6209 CTTTGCCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTT 6268 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||| | |||| ||||| |||||||| || | ||||| || | |||||| ||||| Sbjct 6269 CTGCTCGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGA 6328 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || ||||| || || ||| Sbjct 6329 GCTGATCTCGCGAGACGAAGGCCTGCAC 6356 >seq3669 Length=12011 Score = 95.1 bits (104), Expect = 2e-14 Identities = 245/366 (67%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| ||||| || ||||| ||||||| ||||||||| | Sbjct 4327 AAACCCATCCATTTCGGTCAACAGCTGATTTATAGTCTGTTCCCTTTCATCATTTCCA-- 4270 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| ||||| | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 4269 CCGCCCATTCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCGTCAATGAACACAATG 4210 Query 16092 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || || | ||| | ||| ||||| | ||||| || | | || || || || Sbjct 4209 CAAGG-AGCTTTCGACTTAGCCTTCTCAAACAAATCCCTAACCCTCGAAGCTCCAACCCC 4151 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||||||| |||||| || | | || | || || ||| || | || || Sbjct 4150 GACAAACAGCTCCACGAATTCCGAAGCAGCGCAGGAGAAGAAAGGAGTCCCCGCCTCTCC 4091 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || | ||||| || ||||| || || || ||||| ||| || | | | |||| Sbjct 4090 GGCCACGGCTCTTGCCAGAAGCGTTTTCCCGGTACCGGGCGGGCCGACTAACA-AACACC 4032 Query 16271 TCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 | | |||||||| || || | || ||| | || || | |||||| |||||||||| Sbjct 4031 CCTTCGGAATCTTAGCTCCCAATGCAGTGTACTTATCCGGGTTCTTAAGGAAATCCACAA 3972 Query 16330 TCTCTT 16335 ||||| Sbjct 3971 CCTCTT 3966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620366874125840