Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq26787 96.9 4e-15 seq17269 89.7 6e-13 seq20398 87.8 2e-12 seq22220 86.0 7e-12 >seq26787 Length=21907 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || || ||||| ||||| || |||| ||||||||||| | ||| Sbjct 16313 TGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCCT 16372 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| || || | || || ||||| || |||||||| || || || ||| Sbjct 16373 CGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAG 16432 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || | || ||||||||||| Sbjct 16433 GCGAACGCTATCAGCCGCTCAGCAAA 16458 >seq17269 Length=45834 Score = 89.7 bits (98), Expect = 6e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| || || Sbjct 17565 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGAGACCTGTA 17624 Query 136776 TGGG 136779 |||| Sbjct 17625 TGGG 17628 >seq20398 Length=45672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAG 136769 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 39928 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGAG 39876 >seq22220 Length=11010 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 ||||||||||||||||||||||||||| ||||||||||||||| |||||||| || || Sbjct 2074 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATAGGTTCGAGACCTGTA 2133 Query 136776 TGGG 136779 |||| Sbjct 2134 TGGG 2137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588619691606600