Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 96.9 4e-15
seq17269 89.7 6e-13
seq20398 87.8 2e-12
seq22220 86.0 7e-12
>seq26787
Length=21907
Score = 96.9 bits (106), Expect = 4e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || ||||| || || ||||| ||||| || |||| ||||||||||| | |||
Sbjct 16313 TGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCCT 16372
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| || || | || || ||||| || |||||||| || || || |||
Sbjct 16373 CGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAG 16432
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653
||||| || | || |||||||||||
Sbjct 16433 GCGAACGCTATCAGCCGCTCAGCAAA 16458
>seq17269
Length=45834
Score = 89.7 bits (98), Expect = 6e-13
Identities = 59/64 (92%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775
||||||||||||||||||||||||||| |||||||||||||||| |||||||| || ||
Sbjct 17565 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGAGACCTGTA 17624
Query 136776 TGGG 136779
||||
Sbjct 17625 TGGG 17628
>seq20398
Length=45672
Score = 87.8 bits (96), Expect = 2e-12
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAG 136769
||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 39928 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACAGGTTCGAG 39876
>seq22220
Length=11010
Score = 86.0 bits (94), Expect = 7e-12
Identities = 58/64 (91%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775
||||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||
Sbjct 2074 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATAGGTTCGAGACCTGTA 2133
Query 136776 TGGG 136779
||||
Sbjct 2134 TGGG 2137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588619691606600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |