Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq23783 109 6e-19 seq26787 102 1e-16 seq11108 98.7 1e-15 seq25823 96.9 4e-15 seq3669 95.1 1e-14 seq13309 93.3 5e-14 seq2295 91.5 2e-13 seq19144 89.7 6e-13 seq23268 86.0 7e-12 seq28111 82.4 9e-11 seq27807 82.4 9e-11 >seq23783 Length=11624 Score = 109 bits (120), Expect = 6e-19 Identities = 284/425 (67%), Gaps = 16/425 (4%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9281 |||||| | ||| |||||||| || || | |||| || ||| | || | | | | Sbjct 5309 ATCAAGAACATCCGGCCGATTCGTAGCAGCCAACACAATAACACCCGAATTCCCTGA--A 5366 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| || || |||||||| ||||||| ||||||||| | Sbjct 5367 AATCCATCCATTTCAGTCAACAGCTGATTAATAGTCTGTTCCCTTTCATCATTTCCACCA 5426 Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | |||||| | | ||| | || || |||||||||||||||||||| ||||| || Sbjct 5427 CCAAGACCAGCTCCTCTCTGCCTCCCTACAGCATCAATCTCATCAATGAACACAATGCAA 5486 Query 9402 GG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || ||| ||| || | ||||| | ||| || ||||| || || || || Sbjct 5487 GGAGCCTTGGATTT----AGCCTTCTCAAACAAATCCCGGACCCTAGAAGCCCCAACTCC 5542 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| ||||||||| | | || | || || |||||| | || || Sbjct 5543 CACAAACAGCTCCACAAACTCCGAAGCCGCGCAAGAGAAGAAGGGAGTTCCCGCCTCTCC 5602 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | |||| || ||||| ||||||||||| || || || | || | | || | Sbjct 5603 GGCGACCGCTCTCGCCAGAAGCGTCTTACCCGTCCCCGGAGGCCCGACCAGCA-GACATC 5661 Query 9578 CCGT-GGAATCTTGGC-GCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 | | ||||||||||| ||| || | || | || || | |||||| ||||| ||| Sbjct 5662 CTTTCGGAATCTTGGCTCCCAGAGCCGTA-TACTTATCCGGATTCTTGAGGAAATCAACA 5720 Query 9636 ATCTC 9640 | ||| Sbjct 5721 ACCTC 5725 >seq26787 Length=21907 Score = 102 bits (112), Expect = 1e-16 Identities = 142/198 (72%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| ||||| || ||||| || || || || || |||||| || || ||||| | || Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| |||| | |||||| |||||||||||||| || || || || Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATT 117462 || ||||| | || ||||| || ||||| | | | ||| | |||||||| Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGACTCCCCGCC-----GTCGATCCATTTCAAC 16486 Query 117463 GCCCATTTCGCCTTCTTC 117480 ||||| | |||||||||| Sbjct 16487 GCCCACTGCGCCTTCTTC 16504 >seq11108 Length=39206 Score = 98.7 bits (108), Expect = 1e-15 Identities = 247/370 (67%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 || ||||| |||||||| || ||||| ||||| | || || || | || ||||| || Sbjct 4721 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 4780 Query 9339 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | ||||| | | |||| |||| || |||||||| ||||||| || || || Sbjct 4781 CCGCCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATG 4840 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || || || ||| ||||| ||||| || | || || |||||| Sbjct 4841 CACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCA 4900 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||| ||||| || | || | |||| | ||| ||||| || ||||| Sbjct 4901 ACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGGACGCCAGCCTCACC 4959 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 ||||||||| || ||||| ||||| || || || || ||| || || |||| Sbjct 4960 AGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAACACC 5019 Query 9578 CCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 ||||| || ||| | |||| |||||||||| | ||| || || |||||| Sbjct 5020 TTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACA 5077 Query 9636 ATCTCTTCCA 9645 | |||||| Sbjct 5078 A---CTTCCA 5084 >seq25823 Length=50596 Score = 96.9 bits (106), Expect = 4e-15 Identities = 249/373 (67%), Gaps = 15/373 (4%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 || ||||| |||||||| || ||||| ||||| | || || || | || ||||| || Sbjct 44439 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 44380 Query 9339 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 |||| ||||| | | |||| |||| || |||||||| ||||||| || || Sbjct 44379 CC---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACT 44323 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || || || || || || ||| ||||| ||||| || | || || ||| Sbjct 44322 ATGCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACA 44263 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514 |||||||||||||| ||||| || | || | |||| | ||| || || || || Sbjct 44262 CCAACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGAACGCCAGCCTC 44204 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| ||||||||| || ||||| ||||| || || || || ||| || || | Sbjct 44203 ACCAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAAC 44144 Query 9575 ACCCCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCC 9632 ||| ||||| || ||| | |||| |||||||||| | ||| || || ||| Sbjct 44143 ACCTTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCC 44086 Query 9633 ACAATCTCTTCCA 9645 |||| |||||| Sbjct 44085 ACAA---CTTCCA 44076 >seq3669 Length=12011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 245/366 (67%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| || || || ||||| ||||||| ||||||||| | Sbjct 4327 AAACCCATCCATTTCGGTCAACAGCTGATTTATAGTCTGTTCCCTTTCATCATTTCCA-- 4270 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | ||| ||||| | | ||| | ||||| ||||||||||| |||||||| ||||| Sbjct 4269 CCGCCCATTCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCGTCAATGAACACAATG 4210 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | || | ||||| | ||| | |||||| || || || || Sbjct 4209 CAAGG-AGCTTTCGACTTAGCCTTCTCAAACAAATCCCTAACCCTCGAAGCTCCAACCCC 4151 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| |||||| || | | || | || || ||| || | || || Sbjct 4150 GACAAACAGCTCCACGAATTCCGAAGCAGCGCAGGAGAAGAAAGGAGTCCCCGCCTCTCC 4091 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | ||||| || ||||| || || || ||||| ||| || | | | |||| Sbjct 4090 GGCCACGGCTCTTGCCAGAAGCGTTTTCCCGGTACCGGGCGGGCCGACTAACA-AACACC 4032 Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 || | |||||||| || || | || ||| | || || | ||| || |||||||||| Sbjct 4031 CCTTCGGAATCTTAGCTCCCAATGCAGTGTACTTATCCGGGTTCTTAAGGAAATCCACAA 3972 Query 9637 TCTCTT 9642 ||||| Sbjct 3971 CCTCTT 3966 >seq13309 Length=30306 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || ||||| || || || || || |||||| | || ||||| | || Sbjct 6356 GTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCC 6297 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| |||| | |||||| |||||||||||||| || || || || Sbjct 6296 GCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCA 6237 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATT 117462 || ||||||| || | |||||| ||| | | | | ||| | |||||||| Sbjct 6236 GGCGAACGCAATCAGCCTCTCGGCAAAGCACTCCCCGCC-----GTCGATCCATTTCAAC 6182 Query 117463 GCCCATTTCGCCTTCTTC 117480 ||||| | |||||||||| Sbjct 6181 GCCCACTGCGCCTTCTTC 6164 >seq2295 Length=9791 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| ||||||||||| ||||||||||| ||||| || | || ||| | ||| | ||| Sbjct 7812 CTGTGGTCTTGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTG 7871 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||| || |||||| | | | ||||||||||| ||| |||||| || | | Sbjct 7872 AGACATGAAGTGGTATGTTTTAATAGCCGAATCAATGTCATCCTTGTGGATTCCAACAGA 7931 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345 || | ||| | ||||| ||| || |||| | | | || | || || || | || | Sbjct 7932 AACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGA-CCTTTAATAGGT 7990 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | |||| ||||| |||| ||||| ||| || ||||| |||| || Sbjct 7991 ATGACCTCTCCAGGGTCTTGAATCCAAAATAATCATAATCAAAGTCACG 8039 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || ||||||||||||||||| ||||| || || | ||| ||||| | Sbjct 6587 GGTAGTGCAATTGATGCCAAATTGCACACAGCAGTTTCCGTGGGACTTGTATACTCAATG 6646 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || |||||||| || ||| ||||| || |||| ||||| ||||| || || || Sbjct 6647 ATCTCAGTACACAAATTTGAAGATTTAATTGTTCCCAGATTCTGCTGGTTGCTTTTCCTG 6706 Query 106577 TTGCACGCATCCTTGTAGAG 106596 ||||| | |||| |||||| Sbjct 6707 TTGCAGGTGTCCTGGTAGAG 6726 >seq19144 Length=21831 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 |||||||||||||| |||||||| || ||||| || | || ||| | ||| | ||| Sbjct 17933 TGCGGTCTTGGTGTTCCAGCATTAAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTGT 17874 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 ||||| || |||||| | | | ||||||||||| ||| |||||| |||| | Sbjct 17873 GACATGAAGTGGTATGTTTTAATAGCTGAATCAATGTCATCCTTGTGGATCCCGACAGAA 17814 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| ||| || |||| | | | || | || || | | || || Sbjct 17813 ACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACCTTTCCCTGGA-CCTTCAACAGGTA 17755 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | |||| ||||| || | ||||| ||| || ||||| ||||||| Sbjct 17754 TGACCTCTCTAGGGTCTTAAATCCAAAATAATCATAATCAAAGTCCCG 17707 >seq23268 Length=13954 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| || ||||| || ||||| ||||| |||||||| ||||||| ||||||||| | Sbjct 6038 AAACCCGTCCATTTCCGTCAACAGTTGATTAATAGTCTGTTCCCTTTCATCATTTCCACC 6097 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | |||||| | | || | || || |||||||||||||||||||| ||||| || Sbjct 6098 ACCAAGACCAGCTCCTCTCTGTCTCCCTACAGCATCAATCTCATCAATGAACACAATGCA 6157 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || || || | ||||| | ||| | |||||| || || || || || Sbjct 6158 AGGAGCCTTCGACTTAGCCTTCTCAAACAAATCCCTAACCCTAGAAGCCCCAACTCCCAC 6217 Query 9461 AAACATCTCCACAAA 9475 ||||| |||||| || Sbjct 6218 AAACAGCTCCACGAA 6232 >seq28111 Length=56930 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || || ||||| | |||||||||||| |||||| | | || ||| || | | Sbjct 4034 GGCAGTGCTATCGATGCTAGATTGCAAACAGCTGTCTCAGTCGGACTTGAGTATTCAATA 3975 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 ||||| || |||| ||| || ||| || ||||||||||| | ||||| || ||| || Sbjct 3974 ATTTCAGTGCACAGGTTTGAGGACTTTATTGTCCCCAAATTTTGCTGGTTGCTTTTTCTG 3915 Query 106577 TTGCACGCATCCT 106589 ||||| | |||| Sbjct 3914 TTGCAAGAGTCCT 3902 >seq27807 Length=83522 Score = 82.4 bits (90), Expect = 9e-11 Identities = 244/370 (66%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| |||||||| || || |||||||| || || | ||| ||||| | Sbjct 71190 AAACCCATCCATTTCTGTCAACAGCTGATTAATAGTCTGCTCTCTTTCGTCATTTCCAC- 71248 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 || ||| ||||| | | ||| | || || ||||||||||| || ||||| ||||| Sbjct 71249 CAC-CCATTCCAGCCCCTCTCTGCCTCCCTACAGCATCAATCTCGTCGATGAACACAATG 71307 Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 || || | || ||| || | ||||| | ||| | |||||| || || | Sbjct 71308 CAAGGAGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACCCTCGAAGCTCCAA 71362 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 | || ||||||| |||||| || | | || | || || ||| || | || Sbjct 71363 CCCCGACAAACAGCTCCACGAACTCCGAAGCAGCGCAGGAGAAGAAAGGAGTCCCCGCTT 71422 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9573 | || || | ||||| || ||||| || || || || || ||| || | | | Sbjct 71423 CTCCGGCCACGGCTCTTGCCAGAAGCGTTTTCCCGGTTCCGGGCGGGCCGACTAACA-AA 71481 Query 9574 CACCCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCC 9632 |||||| | |||||||| || || | || ||| | || || | ||| || |||||| Sbjct 71482 CACCCCTTCGGAATCTTAGCTCCCAATGCAGTGTACTTATCCGGGTTCTTAAGGAAATCC 71541 Query 9633 ACAATCTCTT 9642 |||| ||||| Sbjct 71542 ACAACCTCTT 71551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589623883740280