Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq23783 109 6e-19
seq26787 102 1e-16
seq11108 98.7 1e-15
seq25823 96.9 4e-15
seq3669 95.1 1e-14
seq13309 93.3 5e-14
seq2295 91.5 2e-13
seq19144 89.7 6e-13
seq23268 86.0 7e-12
seq28111 82.4 9e-11
seq27807 82.4 9e-11
>seq23783
Length=11624
Score = 109 bits (120), Expect = 6e-19
Identities = 284/425 (67%), Gaps = 16/425 (4%)
Strand=Plus/Plus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9281
|||||| | ||| |||||||| || || | |||| || ||| | || | | | |
Sbjct 5309 ATCAAGAACATCCGGCCGATTCGTAGCAGCCAACACAATAACACCCGAATTCCCTGA--A 5366
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| |||||||| || ||||| || || |||||||| ||||||| ||||||||| |
Sbjct 5367 AATCCATCCATTTCAGTCAACAGCTGATTAATAGTCTGTTCCCTTTCATCATTTCCACCA 5426
Query 9342 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
| |||||| | | ||| | || || |||||||||||||||||||| ||||| ||
Sbjct 5427 CCAAGACCAGCTCCTCTCTGCCTCCCTACAGCATCAATCTCATCAATGAACACAATGCAA 5486
Query 9402 GG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457
|| ||| ||| || | ||||| | ||| || ||||| || || || ||
Sbjct 5487 GGAGCCTTGGATTT----AGCCTTCTCAAACAAATCCCGGACCCTAGAAGCCCCAACTCC 5542
Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517
||||||| ||||||||| | | || | || || |||||| | || ||
Sbjct 5543 CACAAACAGCTCCACAAACTCCGAAGCCGCGCAAGAGAAGAAGGGAGTTCCCGCCTCTCC 5602
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577
|| | |||| || ||||| ||||||||||| || || || | || | | || |
Sbjct 5603 GGCGACCGCTCTCGCCAGAAGCGTCTTACCCGTCCCCGGAGGCCCGACCAGCA-GACATC 5661
Query 9578 CCGT-GGAATCTTGGC-GCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635
| | ||||||||||| ||| || | || | || || | |||||| ||||| |||
Sbjct 5662 CTTTCGGAATCTTGGCTCCCAGAGCCGTA-TACTTATCCGGATTCTTGAGGAAATCAACA 5720
Query 9636 ATCTC 9640
| |||
Sbjct 5721 ACCTC 5725
>seq26787
Length=21907
Score = 102 bits (112), Expect = 1e-16
Identities = 142/198 (72%), Gaps = 7/198 (4%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| ||||| || ||||| || || || || || |||||| || || ||||| | ||
Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||||| ||| |||| | |||||| |||||||||||||| || || || ||
Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATT 117462
|| ||||| | || ||||| || ||||| | | | ||| | ||||||||
Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGACTCCCCGCC-----GTCGATCCATTTCAAC 16486
Query 117463 GCCCATTTCGCCTTCTTC 117480
||||| | ||||||||||
Sbjct 16487 GCCCACTGCGCCTTCTTC 16504
>seq11108
Length=39206
Score = 98.7 bits (108), Expect = 1e-15
Identities = 247/370 (67%), Gaps = 9/370 (2%)
Strand=Plus/Plus
Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338
|| ||||| |||||||| || ||||| ||||| | || || || | || ||||| ||
Sbjct 4721 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 4780
Query 9339 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| ||||| | | |||| |||| || |||||||| ||||||| || || ||
Sbjct 4781 CCGCCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATG 4840
Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458
|| || || || || ||| ||||| ||||| || | || || ||||||
Sbjct 4841 CACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCA 4900
Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517
||||||||||| ||||| || | || | |||| | ||| ||||| || |||||
Sbjct 4901 ACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGGACGCCAGCCTCACC 4959
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577
||||||||| || ||||| ||||| || || || || ||| || || ||||
Sbjct 4960 AGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAACACC 5019
Query 9578 CCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCCACA 9635
||||| || ||| | |||| |||||||||| | ||| || || ||||||
Sbjct 5020 TTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACA 5077
Query 9636 ATCTCTTCCA 9645
| ||||||
Sbjct 5078 A---CTTCCA 5084
>seq25823
Length=50596
Score = 96.9 bits (106), Expect = 4e-15
Identities = 249/373 (67%), Gaps = 15/373 (4%)
Strand=Plus/Minus
Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338
|| ||||| |||||||| || ||||| ||||| | || || || | || ||||| ||
Sbjct 44439 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 44380
Query 9339 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395
|||| ||||| | | |||| |||| || |||||||| ||||||| || ||
Sbjct 44379 CC---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACT 44323
Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455
|| || || || || || ||| ||||| ||||| || | || || |||
Sbjct 44322 ATGCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACA 44263
Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514
|||||||||||||| ||||| || | || | |||| | ||| || || || ||
Sbjct 44262 CCAACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGAACGCCAGCCTC 44204
Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574
||| ||||||||| || ||||| ||||| || || || || ||| || || |
Sbjct 44203 ACCAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAAC 44144
Query 9575 ACCCCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCC 9632
||| ||||| || ||| | |||| |||||||||| | ||| || || |||
Sbjct 44143 ACCTTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCC 44086
Query 9633 ACAATCTCTTCCA 9645
|||| ||||||
Sbjct 44085 ACAA---CTTCCA 44076
>seq3669
Length=12011
Score = 95.1 bits (104), Expect = 1e-14
Identities = 245/366 (67%), Gaps = 8/366 (2%)
Strand=Plus/Minus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| |||||||| || ||||| || || || ||||| ||||||| ||||||||| |
Sbjct 4327 AAACCCATCCATTTCGGTCAACAGCTGATTTATAGTCTGTTCCCTTTCATCATTTCCA-- 4270
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| ||| ||||| | | ||| | ||||| ||||||||||| |||||||| |||||
Sbjct 4269 CCGCCCATTCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCGTCAATGAACACAATG 4210
Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457
|| || | ||| | || | ||||| | ||| | |||||| || || || ||
Sbjct 4209 CAAGG-AGCTTTCGACTTAGCCTTCTCAAACAAATCCCTAACCCTCGAAGCTCCAACCCC 4151
Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517
||||||| |||||| || | | || | || || ||| || | || ||
Sbjct 4150 GACAAACAGCTCCACGAATTCCGAAGCAGCGCAGGAGAAGAAAGGAGTCCCCGCCTCTCC 4091
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577
|| | ||||| || ||||| || || || ||||| ||| || | | | ||||
Sbjct 4090 GGCCACGGCTCTTGCCAGAAGCGTTTTCCCGGTACCGGGCGGGCCGACTAACA-AACACC 4032
Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636
|| | |||||||| || || | || ||| | || || | ||| || ||||||||||
Sbjct 4031 CCTTCGGAATCTTAGCTCCCAATGCAGTGTACTTATCCGGGTTCTTAAGGAAATCCACAA 3972
Query 9637 TCTCTT 9642
|||||
Sbjct 3971 CCTCTT 3966
>seq13309
Length=30306
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/198 (71%), Gaps = 7/198 (4%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| || || || ||||| || || || || || |||||| | || ||||| | ||
Sbjct 6356 GTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCC 6297
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||||| ||| |||| | |||||| |||||||||||||| || || || ||
Sbjct 6296 GCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCA 6237
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATT 117462
|| ||||||| || | |||||| ||| | | | | ||| | ||||||||
Sbjct 6236 GGCGAACGCAATCAGCCTCTCGGCAAAGCACTCCCCGCC-----GTCGATCCATTTCAAC 6182
Query 117463 GCCCATTTCGCCTTCTTC 117480
||||| | ||||||||||
Sbjct 6181 GCCCACTGCGCCTTCTTC 6164
>seq2295
Length=9791
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226
||| ||||||||||| ||||||||||| ||||| || | || ||| | ||| | |||
Sbjct 7812 CTGTGGTCTTGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTG 7871
Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286
||||| || |||||| | | | ||||||||||| ||| |||||| || | |
Sbjct 7872 AGACATGAAGTGGTATGTTTTAATAGCCGAATCAATGTCATCCTTGTGGATTCCAACAGA 7931
Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 107345
|| | ||| | ||||| ||| || |||| | | | || | || || || | || |
Sbjct 7932 AACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGA-CCTTTAATAGGT 7990
Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394
| | |||| ||||| |||| ||||| ||| || ||||| |||| ||
Sbjct 7991 ATGACCTCTCCAGGGTCTTGAATCCAAAATAATCATAATCAAAGTCACG 8039
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
|| || || ||||||||||||||||| ||||| || || | ||| ||||| |
Sbjct 6587 GGTAGTGCAATTGATGCCAAATTGCACACAGCAGTTTCCGTGGGACTTGTATACTCAATG 6646
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
|| || |||||||| || ||| ||||| || |||| ||||| ||||| || || ||
Sbjct 6647 ATCTCAGTACACAAATTTGAAGATTTAATTGTTCCCAGATTCTGCTGGTTGCTTTTCCTG 6706
Query 106577 TTGCACGCATCCTTGTAGAG 106596
||||| | |||| ||||||
Sbjct 6707 TTGCAGGTGTCCTGGTAGAG 6726
>seq19144
Length=21831
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|||||||||||||| |||||||| || ||||| || | || ||| | ||| | |||
Sbjct 17933 TGCGGTCTTGGTGTTCCAGCATTAAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTGT 17874
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
||||| || |||||| | | | ||||||||||| ||| |||||| |||| |
Sbjct 17873 GACATGAAGTGGTATGTTTTAATAGCTGAATCAATGTCATCCTTGTGGATCCCGACAGAA 17814
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346
|| | ||| | ||||| ||| || |||| | | | || | || || | | || ||
Sbjct 17813 ACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACCTTTCCCTGGA-CCTTCAACAGGTA 17755
Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394
| |||| ||||| || | ||||| ||| || ||||| |||||||
Sbjct 17754 TGACCTCTCTAGGGTCTTAAATCCAAAATAATCATAATCAAAGTCCCG 17707
>seq23268
Length=13954
Score = 86.0 bits (94), Expect = 7e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| || ||||| || ||||| ||||| |||||||| ||||||| ||||||||| |
Sbjct 6038 AAACCCGTCCATTTCCGTCAACAGTTGATTAATAGTCTGTTCCCTTTCATCATTTCCACC 6097
Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
| |||||| | | || | || || |||||||||||||||||||| ||||| ||
Sbjct 6098 ACCAAGACCAGCTCCTCTCTGTCTCCCTACAGCATCAATCTCATCAATGAACACAATGCA 6157
Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460
|| || || | ||||| | ||| | |||||| || || || || ||
Sbjct 6158 AGGAGCCTTCGACTTAGCCTTCTCAAACAAATCCCTAACCCTAGAAGCCCCAACTCCCAC 6217
Query 9461 AAACATCTCCACAAA 9475
||||| |||||| ||
Sbjct 6218 AAACAGCTCCACGAA 6232
>seq28111
Length=56930
Score = 82.4 bits (90), Expect = 9e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516
|| || || || ||||| | |||||||||||| |||||| | | || ||| || | |
Sbjct 4034 GGCAGTGCTATCGATGCTAGATTGCAAACAGCTGTCTCAGTCGGACTTGAGTATTCAATA 3975
Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576
||||| || |||| ||| || ||| || ||||||||||| | ||||| || ||| ||
Sbjct 3974 ATTTCAGTGCACAGGTTTGAGGACTTTATTGTCCCCAAATTTTGCTGGTTGCTTTTTCTG 3915
Query 106577 TTGCACGCATCCT 106589
||||| | ||||
Sbjct 3914 TTGCAAGAGTCCT 3902
>seq27807
Length=83522
Score = 82.4 bits (90), Expect = 9e-11
Identities = 244/370 (66%), Gaps = 16/370 (4%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| |||||||| |||||||| || || |||||||| || || | ||| ||||| |
Sbjct 71190 AAACCCATCCATTTCTGTCAACAGCTGATTAATAGTCTGCTCTCTTTCGTCATTTCCAC- 71248
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
|| ||| ||||| | | ||| | || || ||||||||||| || ||||| |||||
Sbjct 71249 CAC-CCATTCCAGCCCCTCTCTGCCTCCCTACAGCATCAATCTCGTCGATGAACACAATG 71307
Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453
|| || | || ||| || | ||||| | ||| | |||||| || || |
Sbjct 71308 CAAGGAGCTTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACCCTCGAAGCTCCAA 71362
Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513
| || ||||||| |||||| || | | || | || || ||| || | ||
Sbjct 71363 CCCCGACAAACAGCTCCACGAACTCCGAAGCAGCGCAGGAGAAGAAAGGAGTCCCCGCTT 71422
Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9573
| || || | ||||| || ||||| || || || || || ||| || | | |
Sbjct 71423 CTCCGGCCACGGCTCTTGCCAGAAGCGTTTTCCCGGTTCCGGGCGGGCCGACTAACA-AA 71481
Query 9574 CACCCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCC 9632
|||||| | |||||||| || || | || ||| | || || | ||| || ||||||
Sbjct 71482 CACCCCTTCGGAATCTTAGCTCCCAATGCAGTGTACTTATCCGGGTTCTTAAGGAAATCC 71541
Query 9633 ACAATCTCTT 9642
|||| |||||
Sbjct 71542 ACAACCTCTT 71551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589623883740280
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