Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq10156 342 6e-89 seq6213 269 3e-67 seq21559 250 3e-61 seq14731 214 2e-50 seq1192 159 4e-34 seq21920 125 8e-24 >seq10156 Length=9543 Score = 342 bits (378), Expect = 6e-89 Identities = 570/820 (70%), Gaps = 3/820 (0%) Strand=Plus/Plus Query 168018 TGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGC 168077 ||| || || | || || ||||| || || | |||||| || | | | ||||| || Sbjct 596 TGGATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGC 655 Query 168078 TATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAA 168137 ||| || | ||||| || || || ||||||||| |||| | ||||| ||||| ||||| Sbjct 656 TATAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAA 715 Query 168138 CGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGG 168197 || ||||||| | ||| | || | ||||| | | ||| | | |||||||| Sbjct 716 TGGCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGG 775 Query 168198 ACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTC 168257 ||||| ||||||||| | || | ||||||| || ||||| | ||||||| || Sbjct 776 TCGTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTC 835 Query 168258 TGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTT 168317 ||||| | || || || | ||| | ||| || | || || | |||||||| || || Sbjct 836 AGCACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTT 895 Query 168318 CTCTGATGCAATGCCACTCGGAAT-CTCAGGAACATTCAACTACATGTTGGTCTTCCAAG 168376 ||| ||| ||||| | ||||| ||| || || ||||||| ||| | | ||||| | Sbjct 896 TTCTAATGGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATG 954 Query 168377 CTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTG 168436 || ||||||| || || ||||| || || || ||| ||||||| | | ||||| ||| Sbjct 955 CTTAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTG 1014 Query 168437 GCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGA 168496 || || |||||||||||||| || ||||| |||| | | | | ||||| || | Sbjct 1015 GCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCA 1074 Query 168497 CTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACA 168556 | |||| ||||| || | | |||| ||||| |||| |||||||| || || | Sbjct 1075 CAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATA 1134 Query 168557 TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACT 168616 | |||| ||||||||||| || || | |||||||| | ||| ||| |||||||||| Sbjct 1135 TTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACT 1194 Query 168617 CCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCC 168676 | || || || || |||||| | || | |||||||| || || ||| ||| || Sbjct 1195 CTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTT 1253 Query 168677 TTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTG 168736 | | | ||| ||||| |||||||| ||||| ||||||||||| || | | ||| Sbjct 1254 TAAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTG 1313 Query 168737 ATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTA 168796 || || | ||||| | | ||||| ||||| ||| || | || || | | | |||| Sbjct 1314 ATAGTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTA 1373 Query 168797 TGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACT 168836 |||| ||||||||||| | ||| || || || ||||| || Sbjct 1374 TGGAGGTTATGCATGAACATAATGCTCATAATTTCCCTCT 1413 >seq6213 Length=1415 Score = 269 bits (298), Expect = 3e-67 Identities = 566/852 (66%), Gaps = 39/852 (5%) Strand=Plus/Plus Query 168037 AACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTAT 168096 || || || || |||||||| || | ||| |||||| ||||| | | ||||| | Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355 Query 168097 CCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTA 168156 || || ||||||||||||| | ||||| ||||| ||||| |||||||||| | || Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415 Query 168157 GTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCA 168216 | || | ||||| | | ||| | | |||||||| ||||| ||||||||| Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475 Query 168217 TATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCG 168276 | | | |||||||||||| ||| | ||||||||| || || || || || | Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535 Query 168277 AGTGCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGAT------------ 168324 | ||| || ||| | || || || |||| | ||| || || | |||| Sbjct 536 ATTGCTGTTTTCTTGGTCTACCCAATCGG-CTAGGAAGCTTTTTTGATTTCTTGATCTAC 594 Query 168325 --------GCA------------------ATGCCACTCGGAATCTCAGGAACATTCAACT 168358 ||| |||| | ||||| || || || ||||||| Sbjct 595 CCAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAACT 654 Query 168359 ACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCG 168418 ||| | || ||||||| ||||||||| || || ||||| || || || ||| | |||| Sbjct 655 TTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCG 714 Query 168419 TTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTT 168478 | ||| | ||||| || ||| | || |||| |||||| || ||||| |||| | Sbjct 715 TAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGTAACTTTTA 774 Query 168479 CTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAG 168538 | | | || || || || |||| ||||| || | ||||| ||||| ||| Sbjct 775 GTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTAAG 834 Query 168539 AAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAAT 168598 | ||||||| || || || |||| ||||||||||| || || || |||||||| || Sbjct 835 AGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTCAT 894 Query 168599 ACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCG 168658 | | | ||||||||| | || | || || |||||| | | | |||||||| | Sbjct 895 ATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCCTGTGATAT 954 Query 168659 GCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACT 168718 | || |||||||| | | || | ||| ||||| | |||||| ||| ||||||| Sbjct 955 GTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAACT 1014 Query 168719 TCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGA 168778 |||| | | | ||||| | || ||| | || | ||||| ||||| ||| || | | Sbjct 1015 TCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTTGGGCTGATATTATTA 1074 Query 168779 ACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCG 168838 |||| ||| || |||||||||||||||||||| ||||| || || |||||||| || | Sbjct 1075 ACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 1134 Query 168839 ATCTTGCTGCTG 168850 | || ||||||| Sbjct 1135 ACCTAGCTGCTG 1146 >seq21559 Length=2991 Score = 250 bits (276), Expect = 3e-61 Identities = 677/1041 (65%), Gaps = 64/1041 (6%) Strand=Plus/Plus Query 167870 AGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTC 167929 ||||| |||| | ||| |||| ||||| ||| | || ||||| || || |||| || | Sbjct 1894 AGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTGATAATCC 1953 Query 167930 CAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTG 167988 | ||| | ||| | | || | | ||| || || || || ||| | || || | || || Sbjct 1954 CTACTTTATTGACCGTAAATTT-TGTATTTATTGTAGCTTTCATTGCAGCGTCTCCAGTA 2012 Query 167989 GACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATC 168048 || || || || || | |||||| | ||| || || | || || ||||| || || Sbjct 2013 GATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAATATTATT 2072 Query 168049 TCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAA 168108 | | ||| || | | | |||| | |||| || | || || || || || |||||| Sbjct 2073 TTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAATATGGGAA 2132 Query 168109 GCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCAC 168168 |||||||| | ||||| ||||| ||||| || || |||| | ||| | || | || Sbjct 2133 GCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGTTCTATAC 2192 Query 168169 TTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGT 168228 || | | ||| | | ||| ||||| |||| ||||||||| | || | ||| Sbjct 2193 TTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAGTCTGGGT 2252 Query 168229 ATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTC 168288 ||||| || ||||| | ||||||| | || || || || || || | | | | ||| Sbjct 2253 ATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTACTATTTTC 2312 Query 168289 CTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGA 168348 || | || || | |||||||| || || | ||||| ||||| | | ||||| | Sbjct 2313 TTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAATCTTCTGT 2372 Query 168349 ACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCAT 168408 || ||||||| ||| | | ||||||||| || | | || || ||||| || || || Sbjct 2373 ACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCCATTTCAC 2432 Query 168409 ATGCTCGGCGTTGCTGGGGTATTTGGTGGC-AGTTTGTTTAGTGCTATGCACGGAAGT-- 168465 ||| | | ||| ||||| ||||| | || ||| ||||||| |||||| || | Sbjct 2433 ATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCA--TAATTCC 2490 Query 168466 TTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTAC 168525 |||| |||||| | | | || || || || |||| |||||| || | | |||| Sbjct 2491 TTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAGATTAC 2550 Query 168526 AAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGT 168585 ||||| ||||| |||||||| || || || ||||| ||||||||||| || || || Sbjct 2551 CGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 2610 Query 168586 TTGATCTTCCAATA---------CGCT--TCA---------------------------- 168606 |||||||| ||||| ||| ||| Sbjct 2611 TTGATCTTTCAATATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTTCAA 2670 Query 168607 ---------TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTC 168657 ||||||||||| || || || || |||||| | | | |||| ||| | Sbjct 2671 TATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATA 2730 Query 168658 GGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAAC 168717 || ||||||||||| || | || | ||| || || ||||| || |||| | |||| Sbjct 2731 GGTATCTGGTTCACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAAC 2790 Query 168718 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTG 168777 ||||| || | | ||||| || | ||| | | | ||||| ||||| ||| || | Sbjct 2791 TTCAATCAATATGTAGTTGATAGTGAAGGTGGCATAATTAACACTTGGGCTGATATTATT 2850 Query 168778 AACCGCG----CTGG-----TCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 168828 ||| | | |||| | |||||||| ||||||||||| ||||| || || ||| Sbjct 2851 AACTGGGTTAACTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAAC 2910 Query 168829 TTCCCACTCGATCTTGCTGCT 168849 ||||| || | || |||||| Sbjct 2911 TTCCCTCTAGGCCTAGCTGCT 2931 >seq14731 Length=28268 Score = 214 bits (236), Expect = 2e-50 Identities = 246/331 (74%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 ||||||| ||||| ||||| |||||||| || || || |||| ||||||||||| || Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 || | |||||||| ||||| | | |||||||||| || || || | |||||| | Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 168699 || || |||||||| | | || |||||||| || | | | ||| ||||| ||| Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959 Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||||| ||| | ||||||||||| || || | ||||| |||| ||||| || | ||| Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 168819 || ||||| || || | ||||| ||| || |||||||||||||||||||| ||||| Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839 Query 168820 GCACACAACTTCCCACTCGATCTTGCTGCTG 168850 || || |||||||| || || || |||||| Sbjct 20838 GCTCATAACTTCCCTCTAGACCTAACTGCTG 20808 >seq1192 Length=17806 Score = 159 bits (176), Expect = 4e-34 Identities = 235/331 (71%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 ||||||| ||||| ||||| |||||||| || ||||| ||||| ||||||||||| | Sbjct 2333 GGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTCT 2392 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 || || ||||| |||| | | ||||||||||| || || || || |||||| | Sbjct 2393 GGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTA 2449 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 168699 || || | |||| | | || || |||||||| | | || | ||| ||||| ||| Sbjct 2450 GCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTTTC 2508 Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||||| ||| | ||||||||||| | || | ||||| | | ||| | | | ||| Sbjct 2509 AACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTAAC 2568 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 168819 | ||||| ||| || | || || ||| || ||| || |||||| |||||| ||||| Sbjct 2569 ATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTAAT 2628 Query 168820 GCACACAACTTCCCACTCGATCTTGCTGCTG 168850 || || |||||||| | || || |||| || Sbjct 2629 GCTCATAACTTCCCTCCAGACCTAGCTGTTG 2659 >seq21920 Length=61477 Score = 125 bits (138), Expect = 8e-24 Identities = 150/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 169539 TATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGA 169598 |||||||||| ||||||||||| ||||| ||| ||||||||||| || || || | || Sbjct 26202 TATGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGGGGCCTGTAGA 26143 Query 169599 ACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAAT 169658 ||||| || || || ||||| || | ||| || ||||| ||| | | || ||||| Sbjct 26142 CTTTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTTTTATGTTACGTCAATTTGAGC 26083 Query 169659 TGGCACGTCTTATTGGCA--TCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGC 169716 | || || | | ||| | || ||||||||||| || |||||||| ||||| ||||| Sbjct 26082 TTGCCCG--ATCTGTGCAATTACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGC 26025 Query 169717 TGTATTTGTCAGTGTCTTTCTT 169738 ||| ||||| ||| || ||| Sbjct 26024 TGTTTTTGTTTCTGTATTCCTT 26003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574126065014760